2016-03-04 10:16:47 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0000_0.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:47 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:48 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0000_0.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:48 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:48 -- INFO **Child Pipe Effector** Got information about other side's allowed calls '('status',)' 2016-03-04 10:16:48 -- INFO **Child Pipe Effector** Informing other side of pipe about my allowed calls 2016-03-04 10:16:48 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:48 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:48 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0058076008339943046, -1.063456211798022) and rotated 0.000104945340051 due to diff to reference Example 2016-03-04 10:16:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000104945340051) 2016-03-04 10:16:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000104945340051) 2016-03-04 10:16:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000104945340051) 2016-03-04 10:16:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000104945340051) 2016-03-04 10:16:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000104945340051) 2016-03-04 10:16:48 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:48 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:48 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:48 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:48 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:49 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0001_1200.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:49 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:49 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0001_1200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:49 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:49 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:49 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:49 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.050431638611343033, -1.0254049647820505) and rotated 0.000142807532675 due to diff to reference Example 2016-03-04 10:16:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000142807532675) 2016-03-04 10:16:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000142807532675) 2016-03-04 10:16:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000142807532675) 2016-03-04 10:16:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000142807532675) 2016-03-04 10:16:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000142807532675) 2016-03-04 10:16:49 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:49 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:49 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:49 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:49 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:50 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0002_2400.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:50 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:50 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0002_2400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:50 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:50 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:50 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:50 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.059753424436905789, -0.8553767722028548) and rotated 0.000136777098552 due to diff to reference Example 2016-03-04 10:16:50 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000136777098552) 2016-03-04 10:16:50 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000136777098552) 2016-03-04 10:16:50 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000136777098552) 2016-03-04 10:16:50 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000136777098552) 2016-03-04 10:16:50 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000136777098552) 2016-03-04 10:16:50 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:50 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:50 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:50 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:50 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:51 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0003_3600.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:51 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:51 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0003_3600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:51 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:51 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:51 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:51 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.08606188004578523, -0.50233334805689844) and rotated 0.000135553379227 due to diff to reference Example 2016-03-04 10:16:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000135553379227) 2016-03-04 10:16:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000135553379227) 2016-03-04 10:16:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000135553379227) 2016-03-04 10:16:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000135553379227) 2016-03-04 10:16:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000135553379227) 2016-03-04 10:16:51 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:51 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:51 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:51 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:51 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:52 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0004_4800.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:52 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:52 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0004_4800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:52 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:52 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:52 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:52 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.10984100685817566, -0.35147974374979185) and rotated 0.000109101282265 due to diff to reference Example 2016-03-04 10:16:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000109101282265) 2016-03-04 10:16:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000109101282265) 2016-03-04 10:16:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000109101282265) 2016-03-04 10:16:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000109101282265) 2016-03-04 10:16:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000109101282265) 2016-03-04 10:16:53 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:53 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:53 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:53 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:53 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:53 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0005_6000.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:53 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:53 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0005_6000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:53 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:53 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:53 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:53 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.091317443501329379, -0.12546240712094914) and rotated 0.000110796544973 due to diff to reference Example 2016-03-04 10:16:53 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000110796544973) 2016-03-04 10:16:53 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000110796544973) 2016-03-04 10:16:53 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000110796544973) 2016-03-04 10:16:53 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000110796544973) 2016-03-04 10:16:53 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000110796544973) 2016-03-04 10:16:54 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:54 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:54 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:54 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:54 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:54 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0006_7200.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:54 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:54 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0006_7200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:54 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:54 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:54 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:54 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.15337566815185255, -0.28552688499087253) and rotated 0.000100317526109 due to diff to reference Example 2016-03-04 10:16:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000100317526109) 2016-03-04 10:16:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000100317526109) 2016-03-04 10:16:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000100317526109) 2016-03-04 10:16:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000100317526109) 2016-03-04 10:16:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 0.000100317526109) 2016-03-04 10:16:55 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:55 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:55 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:55 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:55 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:55 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0007_8400.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:55 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:55 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0007_8400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:55 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:55 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:55 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:55 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.18177034086065191, -0.2268362512410628) and rotated 6.21931502488e-05 due to diff to reference Example 2016-03-04 10:16:55 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.21931502488e-05) 2016-03-04 10:16:55 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.21931502488e-05) 2016-03-04 10:16:55 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.21931502488e-05) 2016-03-04 10:16:55 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.21931502488e-05) 2016-03-04 10:16:55 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.21931502488e-05) 2016-03-04 10:16:56 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:56 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:56 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:56 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:56 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:56 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0008_9600.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:56 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:56 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0008_9600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:56 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:56 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:56 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:56 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.072759960859182612, -0.15968234282574181) and rotated 9.84930129895e-05 due to diff to reference Example 2016-03-04 10:16:56 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.84930129895e-05) 2016-03-04 10:16:56 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.84930129895e-05) 2016-03-04 10:16:56 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.84930129895e-05) 2016-03-04 10:16:56 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.84930129895e-05) 2016-03-04 10:16:56 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.84930129895e-05) 2016-03-04 10:16:57 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:57 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:57 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:57 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:57 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:57 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0009_10800.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:57 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:57 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0009_10800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:57 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:58 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:58 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:58 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.1691885442051273, -0.18066028571972007) and rotated 5.20309931663e-05 due to diff to reference Example 2016-03-04 10:16:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.20309931663e-05) 2016-03-04 10:16:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.20309931663e-05) 2016-03-04 10:16:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.20309931663e-05) 2016-03-04 10:16:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.20309931663e-05) 2016-03-04 10:16:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.20309931663e-05) 2016-03-04 10:16:58 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:58 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:58 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:58 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:58 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:58 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0010_12000.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:58 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:58 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0010_12000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:58 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:16:59 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:16:59 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:16:59 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14948504690881728, 0.013328276638048919) and rotated 4.37075102336e-05 due to diff to reference Example 2016-03-04 10:16:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.37075102336e-05) 2016-03-04 10:16:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.37075102336e-05) 2016-03-04 10:16:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.37075102336e-05) 2016-03-04 10:16:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.37075102336e-05) 2016-03-04 10:16:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.37075102336e-05) 2016-03-04 10:16:59 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:16:59 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:16:59 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:16:59 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:16:59 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:16:59 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0011_13200.0000.tiff with shape (6000, 4800) 2016-03-04 10:16:59 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:16:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:59 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0011_13200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:16:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:16:59 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:00 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:00 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:00 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.098153137096460341, -0.11858174390105584) and rotated 6.12947284917e-05 due to diff to reference Example 2016-03-04 10:17:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.12947284917e-05) 2016-03-04 10:17:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.12947284917e-05) 2016-03-04 10:17:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.12947284917e-05) 2016-03-04 10:17:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.12947284917e-05) 2016-03-04 10:17:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.12947284917e-05) 2016-03-04 10:17:00 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:00 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:00 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:00 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:00 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:00 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0012_14400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:00 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:00 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0012_14400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:00 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:01 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:01 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:01 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.097810405923193386, 0.069203342154575395) and rotated 5.23396662203e-05 due to diff to reference Example 2016-03-04 10:17:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.23396662203e-05) 2016-03-04 10:17:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.23396662203e-05) 2016-03-04 10:17:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.23396662203e-05) 2016-03-04 10:17:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.23396662203e-05) 2016-03-04 10:17:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.23396662203e-05) 2016-03-04 10:17:01 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:01 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:01 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:01 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:01 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:01 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0013_15600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:01 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:01 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0013_15600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:01 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:02 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:02 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:02 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.11501013320363047, 0.094101392588072486) and rotated 4.58451301021e-05 due to diff to reference Example 2016-03-04 10:17:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.58451301021e-05) 2016-03-04 10:17:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.58451301021e-05) 2016-03-04 10:17:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.58451301021e-05) 2016-03-04 10:17:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.58451301021e-05) 2016-03-04 10:17:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.58451301021e-05) 2016-03-04 10:17:02 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:02 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:02 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:02 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:02 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:02 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0014_16800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:02 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:02 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:02 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0014_16800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:02 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:02 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:03 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:03 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:03 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14318045268714741, 0.10869762351241737) and rotated 4.28056732488e-05 due to diff to reference Example 2016-03-04 10:17:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.28056732488e-05) 2016-03-04 10:17:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.28056732488e-05) 2016-03-04 10:17:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.28056732488e-05) 2016-03-04 10:17:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.28056732488e-05) 2016-03-04 10:17:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.28056732488e-05) 2016-03-04 10:17:03 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:03 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:03 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:03 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:03 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:03 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0015_18000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:03 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:04 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0015_18000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:04 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:04 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:04 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:04 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14285640521722107, 0.13575639122662628) and rotated 4.47281395269e-05 due to diff to reference Example 2016-03-04 10:17:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.47281395269e-05) 2016-03-04 10:17:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.47281395269e-05) 2016-03-04 10:17:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.47281395269e-05) 2016-03-04 10:17:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.47281395269e-05) 2016-03-04 10:17:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.47281395269e-05) 2016-03-04 10:17:04 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:04 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:04 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:04 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:04 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:05 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0016_19200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:05 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:05 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0016_19200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:05 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:05 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:05 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:05 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.074200820424636049, 0.19873049681283797) and rotated 4.43371254047e-05 due to diff to reference Example 2016-03-04 10:17:05 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.43371254047e-05) 2016-03-04 10:17:05 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.43371254047e-05) 2016-03-04 10:17:05 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.43371254047e-05) 2016-03-04 10:17:05 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.43371254047e-05) 2016-03-04 10:17:05 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.43371254047e-05) 2016-03-04 10:17:05 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:05 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:05 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:05 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:05 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:06 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0017_20400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:06 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:06 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0017_20400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:06 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:06 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:06 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:06 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.1342545237118126, 0.18918121675055014) and rotated 4.04337698621e-05 due to diff to reference Example 2016-03-04 10:17:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.04337698621e-05) 2016-03-04 10:17:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.04337698621e-05) 2016-03-04 10:17:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.04337698621e-05) 2016-03-04 10:17:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.04337698621e-05) 2016-03-04 10:17:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.04337698621e-05) 2016-03-04 10:17:06 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:06 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:06 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:06 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:06 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:07 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0018_21600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:07 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:07 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0018_21600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:07 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:07 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:07 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:07 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.13169504059908377, 0.18694587630456758) and rotated 2.78199375887e-05 due to diff to reference Example 2016-03-04 10:17:07 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.78199375887e-05) 2016-03-04 10:17:07 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.78199375887e-05) 2016-03-04 10:17:07 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.78199375887e-05) 2016-03-04 10:17:07 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.78199375887e-05) 2016-03-04 10:17:07 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.78199375887e-05) 2016-03-04 10:17:07 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:07 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:07 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:07 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:07 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:08 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0019_22800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:08 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:08 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:08 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0019_22800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:08 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:08 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:08 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:08 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:08 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.070971361054754808, 0.29051800820794443) and rotated 5.11013492097e-05 due to diff to reference Example 2016-03-04 10:17:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.11013492097e-05) 2016-03-04 10:17:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.11013492097e-05) 2016-03-04 10:17:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.11013492097e-05) 2016-03-04 10:17:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.11013492097e-05) 2016-03-04 10:17:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.11013492097e-05) 2016-03-04 10:17:09 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:09 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:09 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:09 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:09 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:09 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0020_24000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:09 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:09 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0020_24000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:09 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:09 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:09 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:09 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0834288169661382, -0.1511968412759567) and rotated 7.93075176623e-05 due to diff to reference Example 2016-03-04 10:17:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.93075176623e-05) 2016-03-04 10:17:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.93075176623e-05) 2016-03-04 10:17:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.93075176623e-05) 2016-03-04 10:17:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.93075176623e-05) 2016-03-04 10:17:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.93075176623e-05) 2016-03-04 10:17:10 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:10 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:10 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:10 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:10 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:10 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0021_25200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:10 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:10 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0021_25200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:10 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:10 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:10 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:10 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12990672727495203, 0.010443920854337799) and rotated 3.02329381871e-05 due to diff to reference Example 2016-03-04 10:17:10 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02329381871e-05) 2016-03-04 10:17:10 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02329381871e-05) 2016-03-04 10:17:10 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02329381871e-05) 2016-03-04 10:17:10 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02329381871e-05) 2016-03-04 10:17:10 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02329381871e-05) 2016-03-04 10:17:11 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:11 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:11 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:11 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:11 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:11 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0022_26400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:11 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:11 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0022_26400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:11 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:11 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:11 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:11 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.10709201939110358, 0.2310638518796774) and rotated 2.13999132761e-05 due to diff to reference Example 2016-03-04 10:17:11 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.13999132761e-05) 2016-03-04 10:17:11 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.13999132761e-05) 2016-03-04 10:17:11 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.13999132761e-05) 2016-03-04 10:17:11 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.13999132761e-05) 2016-03-04 10:17:11 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.13999132761e-05) 2016-03-04 10:17:12 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:12 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:12 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:12 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:12 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:12 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0023_27600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:12 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:12 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0023_27600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:12 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:12 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:12 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:12 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.048579403198270178, -0.055950547342301128) and rotated 6.07071617633e-05 due to diff to reference Example 2016-03-04 10:17:12 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.07071617633e-05) 2016-03-04 10:17:12 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.07071617633e-05) 2016-03-04 10:17:12 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.07071617633e-05) 2016-03-04 10:17:12 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.07071617633e-05) 2016-03-04 10:17:12 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.07071617633e-05) 2016-03-04 10:17:13 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:13 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:13 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:13 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:13 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:13 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0024_28800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:13 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:13 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0024_28800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:13 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:14 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:14 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:14 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.020918119523997802, -0.094421654070060868) and rotated 5.93697190464e-05 due to diff to reference Example 2016-03-04 10:17:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.93697190464e-05) 2016-03-04 10:17:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.93697190464e-05) 2016-03-04 10:17:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.93697190464e-05) 2016-03-04 10:17:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.93697190464e-05) 2016-03-04 10:17:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.93697190464e-05) 2016-03-04 10:17:14 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:14 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:14 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:14 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:14 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:14 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0025_30000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:14 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:14 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0025_30000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:14 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:15 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:15 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:15 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.003476192851015488, -0.086315852742112995) and rotated 4.89773833958e-05 due to diff to reference Example 2016-03-04 10:17:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.89773833958e-05) 2016-03-04 10:17:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.89773833958e-05) 2016-03-04 10:17:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.89773833958e-05) 2016-03-04 10:17:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.89773833958e-05) 2016-03-04 10:17:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.89773833958e-05) 2016-03-04 10:17:15 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:15 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:15 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:15 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:15 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:15 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0026_31200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:15 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:15 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0026_31200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:15 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:16 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:16 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:16 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0077353410753554881, 0.36956895890078084) and rotated 1.8258692588e-05 due to diff to reference Example 2016-03-04 10:17:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.8258692588e-05) 2016-03-04 10:17:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.8258692588e-05) 2016-03-04 10:17:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.8258692588e-05) 2016-03-04 10:17:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.8258692588e-05) 2016-03-04 10:17:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.8258692588e-05) 2016-03-04 10:17:16 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:16 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:16 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:16 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:16 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:16 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0027_32400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:16 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:16 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0027_32400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:16 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:17 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:17 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:17 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.026200779337472113, -0.024517516275636808) and rotated 4.21344641196e-05 due to diff to reference Example 2016-03-04 10:17:17 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.21344641196e-05) 2016-03-04 10:17:17 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.21344641196e-05) 2016-03-04 10:17:17 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.21344641196e-05) 2016-03-04 10:17:17 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.21344641196e-05) 2016-03-04 10:17:17 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.21344641196e-05) 2016-03-04 10:17:17 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:17 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:17 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:17 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:17 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:17 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0028_33600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:17 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:17 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0028_33600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:17 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:18 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:18 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:18 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0082322177737997517, -0.084963154167060864) and rotated 5.00514175842e-05 due to diff to reference Example 2016-03-04 10:17:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.00514175842e-05) 2016-03-04 10:17:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.00514175842e-05) 2016-03-04 10:17:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.00514175842e-05) 2016-03-04 10:17:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.00514175842e-05) 2016-03-04 10:17:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.00514175842e-05) 2016-03-04 10:17:18 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:18 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:18 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:18 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:18 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:19 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0029_34800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:19 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:19 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0029_34800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:19 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:19 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:19 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:19 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14785094308050853, 0.092756233899099996) and rotated 3.33923410577e-05 due to diff to reference Example 2016-03-04 10:17:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.33923410577e-05) 2016-03-04 10:17:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.33923410577e-05) 2016-03-04 10:17:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.33923410577e-05) 2016-03-04 10:17:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.33923410577e-05) 2016-03-04 10:17:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.33923410577e-05) 2016-03-04 10:17:19 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:19 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:19 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:19 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:19 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:20 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0030_36000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:20 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:20 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0030_36000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:20 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:20 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:20 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:20 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.051954400301241321, 0.38613177606778964) and rotated 1.41005538517e-05 due to diff to reference Example 2016-03-04 10:17:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.41005538517e-05) 2016-03-04 10:17:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.41005538517e-05) 2016-03-04 10:17:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.41005538517e-05) 2016-03-04 10:17:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.41005538517e-05) 2016-03-04 10:17:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.41005538517e-05) 2016-03-04 10:17:20 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:20 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:20 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:20 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:20 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:21 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0031_37200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:21 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:21 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0031_37200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:21 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:21 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:21 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:21 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.034607120765050091, -0.044709763993788933) and rotated 4.71791887176e-05 due to diff to reference Example 2016-03-04 10:17:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.71791887176e-05) 2016-03-04 10:17:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.71791887176e-05) 2016-03-04 10:17:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.71791887176e-05) 2016-03-04 10:17:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.71791887176e-05) 2016-03-04 10:17:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.71791887176e-05) 2016-03-04 10:17:21 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:21 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:21 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:21 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:21 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:22 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0032_38400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:22 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:22 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0032_38400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:22 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:22 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:22 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:22 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.15700359900011071, 0.13877936252725931) and rotated 8.90605851925e-06 due to diff to reference Example 2016-03-04 10:17:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.90605851925e-06) 2016-03-04 10:17:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.90605851925e-06) 2016-03-04 10:17:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.90605851925e-06) 2016-03-04 10:17:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.90605851925e-06) 2016-03-04 10:17:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.90605851925e-06) 2016-03-04 10:17:23 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:23 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:23 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:23 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:23 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:23 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0033_39600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:23 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:23 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0033_39600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:23 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:23 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:23 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:23 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.083680399888407919, 0.12323371217515462) and rotated 3.18672234875e-05 due to diff to reference Example 2016-03-04 10:17:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.18672234875e-05) 2016-03-04 10:17:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.18672234875e-05) 2016-03-04 10:17:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.18672234875e-05) 2016-03-04 10:17:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.18672234875e-05) 2016-03-04 10:17:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.18672234875e-05) 2016-03-04 10:17:24 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:24 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:24 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:24 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:24 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:24 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0034_40800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:24 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:24 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0034_40800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:24 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:24 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:24 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:24 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.13872655149450944, 0.30906597650251416) and rotated -7.37125786653e-07 due to diff to reference Example 2016-03-04 10:17:24 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.37125786653e-07) 2016-03-04 10:17:24 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.37125786653e-07) 2016-03-04 10:17:24 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.37125786653e-07) 2016-03-04 10:17:24 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.37125786653e-07) 2016-03-04 10:17:24 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.37125786653e-07) 2016-03-04 10:17:25 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:25 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:25 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:25 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:25 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:25 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0035_42000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:25 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:25 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0035_42000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:25 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:25 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:25 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:25 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.048838216453380788, -0.036753246710910993) and rotated 4.95658303039e-05 due to diff to reference Example 2016-03-04 10:17:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.95658303039e-05) 2016-03-04 10:17:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.95658303039e-05) 2016-03-04 10:17:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.95658303039e-05) 2016-03-04 10:17:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.95658303039e-05) 2016-03-04 10:17:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.95658303039e-05) 2016-03-04 10:17:26 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:26 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:26 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:26 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:26 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:26 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0036_43200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:26 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:26 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0036_43200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:26 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:27 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:27 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:27 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.096213369877868146, 0.14557057695409034) and rotated 7.92317989649e-06 due to diff to reference Example 2016-03-04 10:17:27 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.92317989649e-06) 2016-03-04 10:17:27 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.92317989649e-06) 2016-03-04 10:17:27 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.92317989649e-06) 2016-03-04 10:17:27 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.92317989649e-06) 2016-03-04 10:17:27 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.92317989649e-06) 2016-03-04 10:17:27 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:27 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:27 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:27 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:27 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:27 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0037_44400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:27 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:27 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0037_44400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:27 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:28 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:28 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:28 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.13036250031701493, 0.18535947116352722) and rotated 2.02483056781e-05 due to diff to reference Example 2016-03-04 10:17:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02483056781e-05) 2016-03-04 10:17:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02483056781e-05) 2016-03-04 10:17:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02483056781e-05) 2016-03-04 10:17:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02483056781e-05) 2016-03-04 10:17:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02483056781e-05) 2016-03-04 10:17:28 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:28 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:28 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:28 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:28 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:28 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0038_45600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:28 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:28 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0038_45600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:28 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:29 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:29 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:29 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033556326894180678, 0.36081647657903204) and rotated 6.89940644782e-06 due to diff to reference Example 2016-03-04 10:17:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.89940644782e-06) 2016-03-04 10:17:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.89940644782e-06) 2016-03-04 10:17:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.89940644782e-06) 2016-03-04 10:17:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.89940644782e-06) 2016-03-04 10:17:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.89940644782e-06) 2016-03-04 10:17:29 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:29 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:29 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:29 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:29 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:29 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0039_46800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:29 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:29 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0039_46800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:29 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:30 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:30 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:30 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.096867319159059662, -0.054480889729992064) and rotated 1.69338205414e-05 due to diff to reference Example 2016-03-04 10:17:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.69338205414e-05) 2016-03-04 10:17:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.69338205414e-05) 2016-03-04 10:17:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.69338205414e-05) 2016-03-04 10:17:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.69338205414e-05) 2016-03-04 10:17:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.69338205414e-05) 2016-03-04 10:17:30 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:30 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:30 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:30 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:30 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:30 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0040_48000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:30 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:31 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0040_48000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:31 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:31 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:31 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:31 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033470080583062632, -0.06605665113030075) and rotated 4.78513172529e-05 due to diff to reference Example 2016-03-04 10:17:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.78513172529e-05) 2016-03-04 10:17:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.78513172529e-05) 2016-03-04 10:17:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.78513172529e-05) 2016-03-04 10:17:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.78513172529e-05) 2016-03-04 10:17:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.78513172529e-05) 2016-03-04 10:17:31 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:31 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:31 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:31 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:31 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:32 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0041_49200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:32 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:32 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0041_49200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:32 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:32 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:32 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:32 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12290080174565787, 0.21992922015984581) and rotated 7.64455682548e-06 due to diff to reference Example 2016-03-04 10:17:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.64455682548e-06) 2016-03-04 10:17:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.64455682548e-06) 2016-03-04 10:17:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.64455682548e-06) 2016-03-04 10:17:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.64455682548e-06) 2016-03-04 10:17:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.64455682548e-06) 2016-03-04 10:17:32 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:32 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:32 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:32 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:32 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:33 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0042_50400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:33 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:33 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:33 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0042_50400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:33 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:33 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:33 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:33 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:33 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12133433781634533, 0.2033194361419722) and rotated 1.14114064926e-05 due to diff to reference Example 2016-03-04 10:17:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14114064926e-05) 2016-03-04 10:17:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14114064926e-05) 2016-03-04 10:17:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14114064926e-05) 2016-03-04 10:17:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14114064926e-05) 2016-03-04 10:17:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14114064926e-05) 2016-03-04 10:17:33 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:33 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:33 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:33 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:33 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:34 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0043_51600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:34 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:34 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0043_51600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:34 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:34 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:34 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:34 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.089194883567226199, 0.43266532316253387) and rotated 7.48523584724e-06 due to diff to reference Example 2016-03-04 10:17:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.48523584724e-06) 2016-03-04 10:17:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.48523584724e-06) 2016-03-04 10:17:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.48523584724e-06) 2016-03-04 10:17:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.48523584724e-06) 2016-03-04 10:17:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.48523584724e-06) 2016-03-04 10:17:34 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:35 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:35 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:35 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:35 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:35 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0044_52800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:35 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:35 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0044_52800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:35 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:35 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:35 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:35 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.095563570243532084, 0.1903015408900425) and rotated -4.92522972426e-06 due to diff to reference Example 2016-03-04 10:17:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.92522972426e-06) 2016-03-04 10:17:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.92522972426e-06) 2016-03-04 10:17:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.92522972426e-06) 2016-03-04 10:17:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.92522972426e-06) 2016-03-04 10:17:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.92522972426e-06) 2016-03-04 10:17:36 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:36 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:36 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:36 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:36 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:36 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0045_54000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:36 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:36 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0045_54000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:36 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:36 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:36 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:36 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.10779287725869342, 0.22884062034936883) and rotated 1.95909431087e-06 due to diff to reference Example 2016-03-04 10:17:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.95909431087e-06) 2016-03-04 10:17:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.95909431087e-06) 2016-03-04 10:17:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.95909431087e-06) 2016-03-04 10:17:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.95909431087e-06) 2016-03-04 10:17:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.95909431087e-06) 2016-03-04 10:17:37 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:37 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:37 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:37 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:37 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:37 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0046_55200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:37 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:37 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0046_55200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:37 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:37 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:37 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:37 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.11575183342292424, 0.22497017834136082) and rotated 9.05999303435e-07 due to diff to reference Example 2016-03-04 10:17:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.05999303435e-07) 2016-03-04 10:17:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.05999303435e-07) 2016-03-04 10:17:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.05999303435e-07) 2016-03-04 10:17:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.05999303435e-07) 2016-03-04 10:17:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.05999303435e-07) 2016-03-04 10:17:38 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:38 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:38 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:38 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:38 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:38 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0047_56400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:38 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:38 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0047_56400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:38 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:39 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:39 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:39 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.085015511202120322, 0.43593055368728528) and rotated 4.16492963425e-06 due to diff to reference Example 2016-03-04 10:17:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.16492963425e-06) 2016-03-04 10:17:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.16492963425e-06) 2016-03-04 10:17:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.16492963425e-06) 2016-03-04 10:17:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.16492963425e-06) 2016-03-04 10:17:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.16492963425e-06) 2016-03-04 10:17:39 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:39 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:39 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:39 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:39 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:39 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0048_57600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:39 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:39 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:39 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0048_57600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:39 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:39 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:40 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:40 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:40 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.10813950234928409, -0.010076774179159051) and rotated 1.26537532386e-05 due to diff to reference Example 2016-03-04 10:17:40 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.26537532386e-05) 2016-03-04 10:17:40 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.26537532386e-05) 2016-03-04 10:17:40 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.26537532386e-05) 2016-03-04 10:17:40 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.26537532386e-05) 2016-03-04 10:17:40 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.26537532386e-05) 2016-03-04 10:17:40 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:40 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:40 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:40 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:40 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:40 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0049_58800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:40 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:40 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0049_58800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:40 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:41 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:41 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:41 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.13317044997013264, 0.24820940180141329) and rotated 3.01234882487e-06 due to diff to reference Example 2016-03-04 10:17:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.01234882487e-06) 2016-03-04 10:17:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.01234882487e-06) 2016-03-04 10:17:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.01234882487e-06) 2016-03-04 10:17:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.01234882487e-06) 2016-03-04 10:17:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.01234882487e-06) 2016-03-04 10:17:41 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:41 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:41 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:41 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:41 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:42 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0050_60000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:42 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:42 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0050_60000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:42 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:42 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:42 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:42 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.13036170528957314, 0.24603155267948296) and rotated -6.74999478057e-06 due to diff to reference Example 2016-03-04 10:17:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74999478057e-06) 2016-03-04 10:17:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74999478057e-06) 2016-03-04 10:17:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74999478057e-06) 2016-03-04 10:17:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74999478057e-06) 2016-03-04 10:17:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74999478057e-06) 2016-03-04 10:17:42 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:42 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:42 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:42 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:42 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:43 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0051_61200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:43 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:43 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0051_61200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:43 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:43 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:43 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:43 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12685721024910399, 0.23869436160945648) and rotated -1.15991243025e-06 due to diff to reference Example 2016-03-04 10:17:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.15991243025e-06) 2016-03-04 10:17:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.15991243025e-06) 2016-03-04 10:17:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.15991243025e-06) 2016-03-04 10:17:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.15991243025e-06) 2016-03-04 10:17:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.15991243025e-06) 2016-03-04 10:17:43 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:43 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:43 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:43 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:43 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:44 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0052_62400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:44 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:44 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0052_62400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:44 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:44 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:44 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:44 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.025098521768787425, -0.057006017984804203) and rotated 3.27752984988e-05 due to diff to reference Example 2016-03-04 10:17:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.27752984988e-05) 2016-03-04 10:17:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.27752984988e-05) 2016-03-04 10:17:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.27752984988e-05) 2016-03-04 10:17:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.27752984988e-05) 2016-03-04 10:17:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.27752984988e-05) 2016-03-04 10:17:44 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:44 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:44 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:44 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:44 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:45 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0053_63600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:45 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:45 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0053_63600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:45 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:45 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:45 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:45 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.16926116908218583, 0.21892905992122755) and rotated -4.08978397529e-06 due to diff to reference Example 2016-03-04 10:17:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.08978397529e-06) 2016-03-04 10:17:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.08978397529e-06) 2016-03-04 10:17:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.08978397529e-06) 2016-03-04 10:17:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.08978397529e-06) 2016-03-04 10:17:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.08978397529e-06) 2016-03-04 10:17:46 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:46 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:46 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:46 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:46 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:46 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0054_64800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:46 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:46 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0054_64800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:46 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:46 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:46 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:46 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12926347661726822, 0.21945745432117292) and rotated -1.22524075818e-05 due to diff to reference Example 2016-03-04 10:17:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.22524075818e-05) 2016-03-04 10:17:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.22524075818e-05) 2016-03-04 10:17:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.22524075818e-05) 2016-03-04 10:17:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.22524075818e-05) 2016-03-04 10:17:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.22524075818e-05) 2016-03-04 10:17:47 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:47 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:47 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:47 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:47 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:47 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0055_66000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:47 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:47 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0055_66000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:47 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:47 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:47 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:47 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14789210750361312, 0.21378002084708214) and rotated 4.83113676926e-06 due to diff to reference Example 2016-03-04 10:17:47 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.83113676926e-06) 2016-03-04 10:17:47 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.83113676926e-06) 2016-03-04 10:17:47 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.83113676926e-06) 2016-03-04 10:17:47 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.83113676926e-06) 2016-03-04 10:17:47 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.83113676926e-06) 2016-03-04 10:17:48 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:48 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:48 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:48 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:48 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:48 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0056_67200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:48 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:48 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0056_67200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:48 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:49 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:49 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:49 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.019635302167472446, -0.043390570730366562) and rotated 3.02821554045e-05 due to diff to reference Example 2016-03-04 10:17:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02821554045e-05) 2016-03-04 10:17:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02821554045e-05) 2016-03-04 10:17:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02821554045e-05) 2016-03-04 10:17:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02821554045e-05) 2016-03-04 10:17:49 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.02821554045e-05) 2016-03-04 10:17:49 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:49 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:49 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:49 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:49 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:49 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0057_68400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:49 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:49 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0057_68400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:49 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:50 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:50 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:50 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14404653288625013, 0.2030914630148383) and rotated -1.0139205514e-05 due to diff to reference Example 2016-03-04 10:17:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0139205514e-05) 2016-03-04 10:17:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0139205514e-05) 2016-03-04 10:17:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0139205514e-05) 2016-03-04 10:17:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0139205514e-05) 2016-03-04 10:17:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0139205514e-05) 2016-03-04 10:17:50 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:50 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:50 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:50 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:50 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:50 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0058_69600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:50 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:50 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0058_69600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:50 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:51 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:51 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:51 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.016502879494311173, 0.18479505732580037) and rotated 1.17723745523e-06 due to diff to reference Example 2016-03-04 10:17:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.17723745523e-06) 2016-03-04 10:17:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.17723745523e-06) 2016-03-04 10:17:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.17723745523e-06) 2016-03-04 10:17:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.17723745523e-06) 2016-03-04 10:17:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.17723745523e-06) 2016-03-04 10:17:51 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:51 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:51 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:51 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:51 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:52 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0059_70800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:52 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:52 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0059_70800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:52 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:52 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:52 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:52 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.036100316211957306, 0.1530213297110663) and rotated 2.11012245197e-05 due to diff to reference Example 2016-03-04 10:17:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.11012245197e-05) 2016-03-04 10:17:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.11012245197e-05) 2016-03-04 10:17:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.11012245197e-05) 2016-03-04 10:17:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.11012245197e-05) 2016-03-04 10:17:52 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.11012245197e-05) 2016-03-04 10:17:52 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:52 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:52 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:52 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:52 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:53 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0060_72000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:53 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:53 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0060_72000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:53 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:53 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:53 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:53 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.119280392347567, 0.040870743966403701) and rotated -8.0560426211e-06 due to diff to reference Example 2016-03-04 10:17:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.0560426211e-06) 2016-03-04 10:17:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.0560426211e-06) 2016-03-04 10:17:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.0560426211e-06) 2016-03-04 10:17:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.0560426211e-06) 2016-03-04 10:17:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.0560426211e-06) 2016-03-04 10:17:53 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:53 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:53 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:53 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:53 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:54 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0061_73200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:54 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:54 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0061_73200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:54 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:54 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:54 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:54 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.025292940846128431, -0.018088185176452498) and rotated 2.50702217775e-05 due to diff to reference Example 2016-03-04 10:17:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.50702217775e-05) 2016-03-04 10:17:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.50702217775e-05) 2016-03-04 10:17:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.50702217775e-05) 2016-03-04 10:17:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.50702217775e-05) 2016-03-04 10:17:54 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.50702217775e-05) 2016-03-04 10:17:54 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:54 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:54 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:54 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:54 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:55 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0062_74400.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:55 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:55 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0062_74400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:55 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:55 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:55 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:55 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.16779755943657429, 0.26796091567947161) and rotated -9.9607536889e-06 due to diff to reference Example 2016-03-04 10:17:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.9607536889e-06) 2016-03-04 10:17:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.9607536889e-06) 2016-03-04 10:17:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.9607536889e-06) 2016-03-04 10:17:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.9607536889e-06) 2016-03-04 10:17:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.9607536889e-06) 2016-03-04 10:17:56 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:56 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:56 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:56 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:56 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:56 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0063_75600.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:56 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:56 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0063_75600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:56 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:56 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:56 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:56 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.1826748256665193, 0.28484824526911251) and rotated -1.19049894093e-05 due to diff to reference Example 2016-03-04 10:17:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.19049894093e-05) 2016-03-04 10:17:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.19049894093e-05) 2016-03-04 10:17:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.19049894093e-05) 2016-03-04 10:17:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.19049894093e-05) 2016-03-04 10:17:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.19049894093e-05) 2016-03-04 10:17:57 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:57 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:57 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:57 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:57 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:57 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0064_76800.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:57 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:57 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0064_76800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:57 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:57 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:57 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:57 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.034346698994454528, 0.54808994725681259) and rotated -2.50744555024e-05 due to diff to reference Example 2016-03-04 10:17:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.50744555024e-05) 2016-03-04 10:17:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.50744555024e-05) 2016-03-04 10:17:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.50744555024e-05) 2016-03-04 10:17:57 -- WARNING **Fixture Image** x2 value (4801.0) outside image, setting to img border 2016-03-04 10:17:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.50744555024e-05) 2016-03-04 10:17:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.50744555024e-05) 2016-03-04 10:17:58 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:58 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:58 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:58 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:58 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:58 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0065_78000.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:58 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:58 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0065_78000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:58 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:17:59 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:17:59 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:17:59 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.041204013959855956, 0.0015434239833780339) and rotated 7.68468236219e-06 due to diff to reference Example 2016-03-04 10:17:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.68468236219e-06) 2016-03-04 10:17:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.68468236219e-06) 2016-03-04 10:17:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.68468236219e-06) 2016-03-04 10:17:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.68468236219e-06) 2016-03-04 10:17:59 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.68468236219e-06) 2016-03-04 10:17:59 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:17:59 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:17:59 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:17:59 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:17:59 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:17:59 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0066_79200.0000.tiff with shape (6000, 4800) 2016-03-04 10:17:59 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:17:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:59 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0066_79200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:17:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:17:59 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:00 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:00 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:00 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0064806096204582291, 0.025930282203603383) and rotated 1.23295948642e-05 due to diff to reference Example 2016-03-04 10:18:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.23295948642e-05) 2016-03-04 10:18:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.23295948642e-05) 2016-03-04 10:18:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.23295948642e-05) 2016-03-04 10:18:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.23295948642e-05) 2016-03-04 10:18:00 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.23295948642e-05) 2016-03-04 10:18:00 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:00 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:00 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:00 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:00 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:00 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0067_80400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:00 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:01 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0067_80400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:01 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:01 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:01 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:01 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.035147971249604858, 0.27760403076350332) and rotated -1.11945023135e-06 due to diff to reference Example 2016-03-04 10:18:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.11945023135e-06) 2016-03-04 10:18:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.11945023135e-06) 2016-03-04 10:18:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.11945023135e-06) 2016-03-04 10:18:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.11945023135e-06) 2016-03-04 10:18:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.11945023135e-06) 2016-03-04 10:18:01 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:01 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:01 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:01 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:01 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:02 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0068_81600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:02 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:02 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:02 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0068_81600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:02 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:02 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:02 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:02 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:02 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0064509466686596779, 0.03568050056552844) and rotated 4.87628851802e-06 due to diff to reference Example 2016-03-04 10:18:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.87628851802e-06) 2016-03-04 10:18:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.87628851802e-06) 2016-03-04 10:18:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.87628851802e-06) 2016-03-04 10:18:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.87628851802e-06) 2016-03-04 10:18:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.87628851802e-06) 2016-03-04 10:18:02 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:02 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:02 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:02 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:02 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:03 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0069_82800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:03 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:03 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0069_82800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:03 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:03 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:03 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:03 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.034051083073819655, 0.025611710692411787) and rotated 1.76216991117e-06 due to diff to reference Example 2016-03-04 10:18:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.76216991117e-06) 2016-03-04 10:18:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.76216991117e-06) 2016-03-04 10:18:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.76216991117e-06) 2016-03-04 10:18:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.76216991117e-06) 2016-03-04 10:18:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.76216991117e-06) 2016-03-04 10:18:03 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:03 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:03 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:03 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:03 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:04 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0070_84000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:04 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:04 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0070_84000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:04 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:04 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:04 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:04 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0078060970882347647, 0.068880357309391613) and rotated -3.44124142953e-06 due to diff to reference Example 2016-03-04 10:18:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.44124142953e-06) 2016-03-04 10:18:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.44124142953e-06) 2016-03-04 10:18:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.44124142953e-06) 2016-03-04 10:18:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.44124142953e-06) 2016-03-04 10:18:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.44124142953e-06) 2016-03-04 10:18:05 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:05 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:05 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:05 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:05 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:05 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0071_85200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:05 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:05 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0071_85200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:05 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:05 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:05 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:05 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.020853418608065038, 0.31659164344618301) and rotated -7.05914682183e-06 due to diff to reference Example 2016-03-04 10:18:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.05914682183e-06) 2016-03-04 10:18:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.05914682183e-06) 2016-03-04 10:18:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.05914682183e-06) 2016-03-04 10:18:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.05914682183e-06) 2016-03-04 10:18:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.05914682183e-06) 2016-03-04 10:18:06 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:06 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:06 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:06 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:06 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:06 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0072_86400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:06 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:06 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0072_86400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:06 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:06 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:06 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:06 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0055306068616403081, 0.056922514684060843) and rotated 1.88870962874e-06 due to diff to reference Example 2016-03-04 10:18:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.88870962874e-06) 2016-03-04 10:18:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.88870962874e-06) 2016-03-04 10:18:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.88870962874e-06) 2016-03-04 10:18:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.88870962874e-06) 2016-03-04 10:18:06 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.88870962874e-06) 2016-03-04 10:18:07 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:07 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:07 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:07 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:07 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:07 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0073_87600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:07 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:07 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0073_87600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:07 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:08 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:08 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:08 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.22480810462423997, 0.1114549665493693) and rotated -1.46529877639e-05 due to diff to reference Example 2016-03-04 10:18:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46529877639e-05) 2016-03-04 10:18:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46529877639e-05) 2016-03-04 10:18:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46529877639e-05) 2016-03-04 10:18:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46529877639e-05) 2016-03-04 10:18:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46529877639e-05) 2016-03-04 10:18:08 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:08 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:08 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:08 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:08 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:08 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0074_88800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:08 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:08 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:08 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0074_88800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:08 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:08 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:09 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:09 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:09 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.028116467274079088, 0.026881101120807216) and rotated 5.2923080773e-06 due to diff to reference Example 2016-03-04 10:18:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.2923080773e-06) 2016-03-04 10:18:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.2923080773e-06) 2016-03-04 10:18:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.2923080773e-06) 2016-03-04 10:18:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.2923080773e-06) 2016-03-04 10:18:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.2923080773e-06) 2016-03-04 10:18:09 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:09 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:09 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:09 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:09 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:09 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0075_90000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:09 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:09 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0075_90000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:09 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:10 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:10 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:10 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.038413302252602456, 0.31734162112563052) and rotated -2.16559980144e-05 due to diff to reference Example 2016-03-04 10:18:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.16559980144e-05) 2016-03-04 10:18:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.16559980144e-05) 2016-03-04 10:18:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.16559980144e-05) 2016-03-04 10:18:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.16559980144e-05) 2016-03-04 10:18:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.16559980144e-05) 2016-03-04 10:18:10 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:10 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:10 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:10 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:10 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:11 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0076_91200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:11 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:11 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0076_91200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:11 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:11 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:11 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:11 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.039311914531737102, 0.29090526091425772) and rotated -4.61001085523e-08 due to diff to reference Example 2016-03-04 10:18:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.61001085523e-08) 2016-03-04 10:18:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.61001085523e-08) 2016-03-04 10:18:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.61001085523e-08) 2016-03-04 10:18:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.61001085523e-08) 2016-03-04 10:18:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.61001085523e-08) 2016-03-04 10:18:11 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:11 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:11 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:11 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:11 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:12 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0077_92400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:12 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:12 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0077_92400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:12 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:12 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:12 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:12 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14940712872539544, 0.080237391014823814) and rotated -6.74140311333e-06 due to diff to reference Example 2016-03-04 10:18:12 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74140311333e-06) 2016-03-04 10:18:12 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74140311333e-06) 2016-03-04 10:18:12 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74140311333e-06) 2016-03-04 10:18:12 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74140311333e-06) 2016-03-04 10:18:12 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.74140311333e-06) 2016-03-04 10:18:12 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:12 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:12 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:12 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:12 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:13 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0078_93600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:13 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:13 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0078_93600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:13 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:13 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:13 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:13 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.14217211521893583, 0.062376951598745713) and rotated -1.46933995863e-05 due to diff to reference Example 2016-03-04 10:18:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46933995863e-05) 2016-03-04 10:18:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46933995863e-05) 2016-03-04 10:18:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46933995863e-05) 2016-03-04 10:18:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46933995863e-05) 2016-03-04 10:18:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.46933995863e-05) 2016-03-04 10:18:14 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:14 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:14 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:14 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:14 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:14 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0079_94800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:14 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:14 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0079_94800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:14 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:14 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:14 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:14 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0035382117254888121, 0.014779258705364859) and rotated 6.69243584485e-06 due to diff to reference Example 2016-03-04 10:18:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.69243584485e-06) 2016-03-04 10:18:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.69243584485e-06) 2016-03-04 10:18:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.69243584485e-06) 2016-03-04 10:18:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.69243584485e-06) 2016-03-04 10:18:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.69243584485e-06) 2016-03-04 10:18:15 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:15 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:15 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:15 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:15 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:15 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0080_96000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:15 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:15 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0080_96000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:15 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:15 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:15 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:15 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.031022299492917682, 0.25562164391821324) and rotated -3.89342856613e-06 due to diff to reference Example 2016-03-04 10:18:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.89342856613e-06) 2016-03-04 10:18:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.89342856613e-06) 2016-03-04 10:18:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.89342856613e-06) 2016-03-04 10:18:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.89342856613e-06) 2016-03-04 10:18:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.89342856613e-06) 2016-03-04 10:18:16 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:16 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:16 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:16 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:16 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:16 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0081_97200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:16 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:16 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0081_97200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:16 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:17 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:17 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:17 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.064985545374942902, 0.27745811094987022) and rotated -9.68777204591e-06 due to diff to reference Example 2016-03-04 10:18:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.68777204591e-06) 2016-03-04 10:18:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.68777204591e-06) 2016-03-04 10:18:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.68777204591e-06) 2016-03-04 10:18:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.68777204591e-06) 2016-03-04 10:18:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.68777204591e-06) 2016-03-04 10:18:17 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:17 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:17 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:17 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:17 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:17 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0082_98400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:17 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:17 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0082_98400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:17 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:18 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:18 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:18 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.044379553907039813, 0.011312754705860092) and rotated 9.50629936235e-06 due to diff to reference Example 2016-03-04 10:18:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.50629936235e-06) 2016-03-04 10:18:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.50629936235e-06) 2016-03-04 10:18:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.50629936235e-06) 2016-03-04 10:18:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.50629936235e-06) 2016-03-04 10:18:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.50629936235e-06) 2016-03-04 10:18:18 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:18 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:18 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:18 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:18 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:18 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0083_99600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:18 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:19 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0083_99600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:19 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:19 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:19 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:19 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.012591266116440162, 0.014241192170535063) and rotated 5.56523904632e-06 due to diff to reference Example 2016-03-04 10:18:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.56523904632e-06) 2016-03-04 10:18:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.56523904632e-06) 2016-03-04 10:18:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.56523904632e-06) 2016-03-04 10:18:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.56523904632e-06) 2016-03-04 10:18:19 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.56523904632e-06) 2016-03-04 10:18:19 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:19 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:19 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:19 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:19 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:20 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0084_100800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:20 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:20 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0084_100800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:20 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:20 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:20 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:20 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0035552495453430311, 0.24588748292281556) and rotated -1.40563998074e-05 due to diff to reference Example 2016-03-04 10:18:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.40563998074e-05) 2016-03-04 10:18:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.40563998074e-05) 2016-03-04 10:18:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.40563998074e-05) 2016-03-04 10:18:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.40563998074e-05) 2016-03-04 10:18:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.40563998074e-05) 2016-03-04 10:18:20 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:20 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:20 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:20 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:20 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:21 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0085_102000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:21 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:21 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0085_102000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:21 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:21 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:21 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:21 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.014916973758081062, 0.23589310641496772) and rotated 1.06812751432e-06 due to diff to reference Example 2016-03-04 10:18:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.06812751432e-06) 2016-03-04 10:18:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.06812751432e-06) 2016-03-04 10:18:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.06812751432e-06) 2016-03-04 10:18:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.06812751432e-06) 2016-03-04 10:18:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.06812751432e-06) 2016-03-04 10:18:21 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:21 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:21 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:21 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:21 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:22 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0086_103200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:22 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:22 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0086_103200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:22 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:22 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:22 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:22 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.05408836666857534, 0.017079816730908231) and rotated 1.72299967741e-05 due to diff to reference Example 2016-03-04 10:18:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.72299967741e-05) 2016-03-04 10:18:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.72299967741e-05) 2016-03-04 10:18:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.72299967741e-05) 2016-03-04 10:18:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.72299967741e-05) 2016-03-04 10:18:22 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.72299967741e-05) 2016-03-04 10:18:23 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:23 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:23 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:23 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:23 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:23 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0087_104400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:23 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:23 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0087_104400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:23 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:23 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:23 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:23 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.058943479211099735, 0.0063081611646869833) and rotated 5.59620733204e-06 due to diff to reference Example 2016-03-04 10:18:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.59620733204e-06) 2016-03-04 10:18:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.59620733204e-06) 2016-03-04 10:18:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.59620733204e-06) 2016-03-04 10:18:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.59620733204e-06) 2016-03-04 10:18:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.59620733204e-06) 2016-03-04 10:18:24 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:24 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:24 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:24 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:24 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:24 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0088_105600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:24 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:24 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0088_105600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:24 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:25 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:25 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:25 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.017571843901511858, 0.013654180825843317) and rotated 3.11140061773e-06 due to diff to reference Example 2016-03-04 10:18:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.11140061773e-06) 2016-03-04 10:18:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.11140061773e-06) 2016-03-04 10:18:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.11140061773e-06) 2016-03-04 10:18:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.11140061773e-06) 2016-03-04 10:18:25 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.11140061773e-06) 2016-03-04 10:18:25 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:25 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:25 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:25 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:25 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:25 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0089_106800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:25 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:25 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0089_106800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:25 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:26 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:26 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:26 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.019559916480848944, 0.26811004197861621) and rotated 5.81387397634e-06 due to diff to reference Example 2016-03-04 10:18:26 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.81387397634e-06) 2016-03-04 10:18:26 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.81387397634e-06) 2016-03-04 10:18:26 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.81387397634e-06) 2016-03-04 10:18:26 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.81387397634e-06) 2016-03-04 10:18:26 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.81387397634e-06) 2016-03-04 10:18:26 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:26 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:26 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:26 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:26 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:27 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0090_108000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:27 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:27 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0090_108000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:27 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:27 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:27 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:27 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.014720498684283712, 0.57020822694880735) and rotated -2.1281382983e-05 due to diff to reference Example 2016-03-04 10:18:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.1281382983e-05) 2016-03-04 10:18:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.1281382983e-05) 2016-03-04 10:18:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.1281382983e-05) 2016-03-04 10:18:27 -- WARNING **Fixture Image** x2 value (4801.0) outside image, setting to img border 2016-03-04 10:18:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.1281382983e-05) 2016-03-04 10:18:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.1281382983e-05) 2016-03-04 10:18:27 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:27 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:27 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:27 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:27 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:28 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0091_109200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:28 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:28 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0091_109200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:28 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:28 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:28 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:28 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.049522190126083387, 0.008096469681542354) and rotated 1.24169410926e-05 due to diff to reference Example 2016-03-04 10:18:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.24169410926e-05) 2016-03-04 10:18:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.24169410926e-05) 2016-03-04 10:18:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.24169410926e-05) 2016-03-04 10:18:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.24169410926e-05) 2016-03-04 10:18:28 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.24169410926e-05) 2016-03-04 10:18:28 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:28 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:28 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:28 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:28 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:29 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0092_110400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:29 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:29 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0092_110400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:29 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:29 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:29 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:29 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.025935300675683948, -0.0020134531688806114) and rotated 6.3518403373e-06 due to diff to reference Example 2016-03-04 10:18:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.3518403373e-06) 2016-03-04 10:18:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.3518403373e-06) 2016-03-04 10:18:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.3518403373e-06) 2016-03-04 10:18:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.3518403373e-06) 2016-03-04 10:18:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.3518403373e-06) 2016-03-04 10:18:30 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:30 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:30 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:30 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:30 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:30 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0093_111600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:30 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:30 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0093_111600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:30 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:30 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:30 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:30 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0090097194389026445, 0.22665618801056553) and rotated 4.14825737282e-06 due to diff to reference Example 2016-03-04 10:18:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.14825737282e-06) 2016-03-04 10:18:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.14825737282e-06) 2016-03-04 10:18:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.14825737282e-06) 2016-03-04 10:18:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.14825737282e-06) 2016-03-04 10:18:30 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.14825737282e-06) 2016-03-04 10:18:31 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:31 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:31 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:31 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:31 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:31 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0094_112800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:31 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:31 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0094_112800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:31 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:32 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:32 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:32 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.031687184155259729, 0.25765644715916852) and rotated 3.16032367593e-06 due to diff to reference Example 2016-03-04 10:18:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.16032367593e-06) 2016-03-04 10:18:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.16032367593e-06) 2016-03-04 10:18:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.16032367593e-06) 2016-03-04 10:18:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.16032367593e-06) 2016-03-04 10:18:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.16032367593e-06) 2016-03-04 10:18:32 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:32 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:32 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:32 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:32 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:32 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0095_114000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:32 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:32 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0095_114000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:32 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:33 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:33 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:33 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.063490200504996139, 0.0085377795889295758) and rotated 1.5945940799e-05 due to diff to reference Example 2016-03-04 10:18:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5945940799e-05) 2016-03-04 10:18:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5945940799e-05) 2016-03-04 10:18:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5945940799e-05) 2016-03-04 10:18:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5945940799e-05) 2016-03-04 10:18:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5945940799e-05) 2016-03-04 10:18:33 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:33 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:33 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:33 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:33 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:33 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0096_115200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:33 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:34 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0096_115200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:34 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:34 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:34 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:34 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.022336084964952835, 0.035003531520923538) and rotated 9.60032720792e-06 due to diff to reference Example 2016-03-04 10:18:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.60032720792e-06) 2016-03-04 10:18:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.60032720792e-06) 2016-03-04 10:18:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.60032720792e-06) 2016-03-04 10:18:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.60032720792e-06) 2016-03-04 10:18:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.60032720792e-06) 2016-03-04 10:18:34 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:34 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:34 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:34 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:34 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:35 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0097_116400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:35 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:35 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0097_116400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:35 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:35 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:35 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:35 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.012932325764552388, 0.25015641798726546) and rotated -5.60676718918e-06 due to diff to reference Example 2016-03-04 10:18:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.60676718918e-06) 2016-03-04 10:18:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.60676718918e-06) 2016-03-04 10:18:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.60676718918e-06) 2016-03-04 10:18:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.60676718918e-06) 2016-03-04 10:18:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.60676718918e-06) 2016-03-04 10:18:35 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:35 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:35 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:35 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:35 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:36 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0098_117600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:36 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:36 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0098_117600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:36 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:36 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:36 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:36 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.033445422691149439, 0.26016255434444702) and rotated 7.16236606815e-06 due to diff to reference Example 2016-03-04 10:18:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.16236606815e-06) 2016-03-04 10:18:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.16236606815e-06) 2016-03-04 10:18:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.16236606815e-06) 2016-03-04 10:18:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.16236606815e-06) 2016-03-04 10:18:36 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.16236606815e-06) 2016-03-04 10:18:37 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:37 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:37 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:37 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:37 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:37 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0099_118800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:37 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:37 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0099_118800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:37 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:37 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:37 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:37 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.032464364359829766, 0.00083687945325057933) and rotated 5.12225475895e-06 due to diff to reference Example 2016-03-04 10:18:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.12225475895e-06) 2016-03-04 10:18:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.12225475895e-06) 2016-03-04 10:18:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.12225475895e-06) 2016-03-04 10:18:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.12225475895e-06) 2016-03-04 10:18:37 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.12225475895e-06) 2016-03-04 10:18:38 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:38 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:38 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:38 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:38 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:38 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0100_120000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:38 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:38 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0100_120000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:38 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:38 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:38 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:38 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.032089811444014536, 0.0097045605782947551) and rotated 1.93056277348e-06 due to diff to reference Example 2016-03-04 10:18:38 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.93056277348e-06) 2016-03-04 10:18:38 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.93056277348e-06) 2016-03-04 10:18:38 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.93056277348e-06) 2016-03-04 10:18:38 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.93056277348e-06) 2016-03-04 10:18:38 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.93056277348e-06) 2016-03-04 10:18:39 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:39 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:39 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:39 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:39 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:39 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0101_121200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:39 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:39 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:39 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0101_121200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:39 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:39 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:40 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:40 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:40 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.035459689322209442, 0.2711099842479901) and rotated -2.47802993735e-05 due to diff to reference Example 2016-03-04 10:18:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.47802993735e-05) 2016-03-04 10:18:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.47802993735e-05) 2016-03-04 10:18:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.47802993735e-05) 2016-03-04 10:18:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.47802993735e-05) 2016-03-04 10:18:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.47802993735e-05) 2016-03-04 10:18:40 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:40 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:40 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:40 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:40 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:40 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0102_122400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:40 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:40 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0102_122400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:40 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:41 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:41 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:41 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.046172630958722038, 0.27002343097494003) and rotated 2.56483056806e-06 due to diff to reference Example 2016-03-04 10:18:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.56483056806e-06) 2016-03-04 10:18:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.56483056806e-06) 2016-03-04 10:18:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.56483056806e-06) 2016-03-04 10:18:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.56483056806e-06) 2016-03-04 10:18:41 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.56483056806e-06) 2016-03-04 10:18:41 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:41 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:41 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:41 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:41 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:42 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0103_123600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:42 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:42 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0103_123600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:42 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:42 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:42 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:42 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.026339641728336954, 0.02355443491095836) and rotated 4.15743204086e-07 due to diff to reference Example 2016-03-04 10:18:42 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.15743204086e-07) 2016-03-04 10:18:42 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.15743204086e-07) 2016-03-04 10:18:42 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.15743204086e-07) 2016-03-04 10:18:42 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.15743204086e-07) 2016-03-04 10:18:42 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.15743204086e-07) 2016-03-04 10:18:42 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:42 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:42 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:42 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:42 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:43 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0104_124800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:43 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:43 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0104_124800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:43 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:43 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:43 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:43 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.035567425649929874, 0.03365829778999796) and rotated 1.75065537289e-06 due to diff to reference Example 2016-03-04 10:18:43 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.75065537289e-06) 2016-03-04 10:18:43 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.75065537289e-06) 2016-03-04 10:18:43 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.75065537289e-06) 2016-03-04 10:18:43 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.75065537289e-06) 2016-03-04 10:18:43 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.75065537289e-06) 2016-03-04 10:18:43 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:43 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:43 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:43 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:43 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:44 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0105_126000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:44 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:44 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0105_126000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:44 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:44 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:44 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:44 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0051865500327418585, 0.2588570055521397) and rotated -1.1296299036e-05 due to diff to reference Example 2016-03-04 10:18:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.1296299036e-05) 2016-03-04 10:18:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.1296299036e-05) 2016-03-04 10:18:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.1296299036e-05) 2016-03-04 10:18:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.1296299036e-05) 2016-03-04 10:18:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.1296299036e-05) 2016-03-04 10:18:45 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:45 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:45 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:45 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:45 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:45 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0106_127200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:45 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:45 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0106_127200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:45 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:45 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:45 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:45 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.014992795585072827, 0.22458896113588858) and rotated -8.77404303783e-06 due to diff to reference Example 2016-03-04 10:18:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.77404303783e-06) 2016-03-04 10:18:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.77404303783e-06) 2016-03-04 10:18:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.77404303783e-06) 2016-03-04 10:18:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.77404303783e-06) 2016-03-04 10:18:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.77404303783e-06) 2016-03-04 10:18:46 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:46 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:46 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:46 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:46 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:46 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0107_128400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:46 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:46 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0107_128400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:46 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:47 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:47 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:47 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.011243794330416298, 0.21107868271163474) and rotated -4.57992841132e-06 due to diff to reference Example 2016-03-04 10:18:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.57992841132e-06) 2016-03-04 10:18:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.57992841132e-06) 2016-03-04 10:18:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.57992841132e-06) 2016-03-04 10:18:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.57992841132e-06) 2016-03-04 10:18:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.57992841132e-06) 2016-03-04 10:18:47 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:47 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:47 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:47 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:47 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:47 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0108_129600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:47 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:47 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0108_129600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:47 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:48 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:48 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:48 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.03921489396169401, 0.0054774912553815129) and rotated 1.09966201632e-06 due to diff to reference Example 2016-03-04 10:18:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.09966201632e-06) 2016-03-04 10:18:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.09966201632e-06) 2016-03-04 10:18:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.09966201632e-06) 2016-03-04 10:18:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.09966201632e-06) 2016-03-04 10:18:48 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.09966201632e-06) 2016-03-04 10:18:48 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:48 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:48 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:48 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:48 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:48 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0109_130800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:48 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:49 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0109_130800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:49 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:49 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:49 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:49 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.020432892399213642, 0.23063100495176059) and rotated -1.43360215047e-05 due to diff to reference Example 2016-03-04 10:18:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.43360215047e-05) 2016-03-04 10:18:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.43360215047e-05) 2016-03-04 10:18:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.43360215047e-05) 2016-03-04 10:18:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.43360215047e-05) 2016-03-04 10:18:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.43360215047e-05) 2016-03-04 10:18:49 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:49 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:49 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:49 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:49 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:50 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0110_132000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:50 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:50 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0110_132000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:50 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:50 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:50 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:50 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0016812013183861534, 0.17333164780958063) and rotated -4.72628042414e-06 due to diff to reference Example 2016-03-04 10:18:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.72628042414e-06) 2016-03-04 10:18:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.72628042414e-06) 2016-03-04 10:18:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.72628042414e-06) 2016-03-04 10:18:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.72628042414e-06) 2016-03-04 10:18:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.72628042414e-06) 2016-03-04 10:18:50 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:50 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:50 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:50 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:50 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:51 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0111_133200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:51 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:51 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0111_133200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:51 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:51 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:51 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:51 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0015243956401036485, 0.19485537702333508) and rotated -1.77841475057e-06 due to diff to reference Example 2016-03-04 10:18:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.77841475057e-06) 2016-03-04 10:18:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.77841475057e-06) 2016-03-04 10:18:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.77841475057e-06) 2016-03-04 10:18:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.77841475057e-06) 2016-03-04 10:18:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.77841475057e-06) 2016-03-04 10:18:52 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:52 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:52 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:52 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:52 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:52 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0112_134400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:52 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:52 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0112_134400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:52 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:52 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:52 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:52 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.16695759307975777, 0.028543075825950837) and rotated -1.17201846218e-05 due to diff to reference Example 2016-03-04 10:18:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.17201846218e-05) 2016-03-04 10:18:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.17201846218e-05) 2016-03-04 10:18:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.17201846218e-05) 2016-03-04 10:18:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.17201846218e-05) 2016-03-04 10:18:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.17201846218e-05) 2016-03-04 10:18:53 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:53 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:53 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:53 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:53 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:53 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0113_135600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:53 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:53 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0113_135600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:53 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:54 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:54 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:54 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.097116597563967844, 0.0023314899306493921) and rotated -1.39380972666e-05 due to diff to reference Example 2016-03-04 10:18:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.39380972666e-05) 2016-03-04 10:18:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.39380972666e-05) 2016-03-04 10:18:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.39380972666e-05) 2016-03-04 10:18:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.39380972666e-05) 2016-03-04 10:18:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.39380972666e-05) 2016-03-04 10:18:54 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:54 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:54 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:54 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:54 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:54 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0114_136800.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:54 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:54 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0114_136800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:54 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:55 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:55 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:55 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0085481215731704197, 0.17293721904123535) and rotated -7.55690672412e-06 due to diff to reference Example 2016-03-04 10:18:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.55690672412e-06) 2016-03-04 10:18:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.55690672412e-06) 2016-03-04 10:18:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.55690672412e-06) 2016-03-04 10:18:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.55690672412e-06) 2016-03-04 10:18:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.55690672412e-06) 2016-03-04 10:18:55 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:55 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:55 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:55 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:55 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:55 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0115_138000.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:55 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:56 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0115_138000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:56 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:56 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:56 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:56 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.016825559031805899, 0.19094592021622248) and rotated -1.51877052899e-06 due to diff to reference Example 2016-03-04 10:18:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.51877052899e-06) 2016-03-04 10:18:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.51877052899e-06) 2016-03-04 10:18:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.51877052899e-06) 2016-03-04 10:18:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.51877052899e-06) 2016-03-04 10:18:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.51877052899e-06) 2016-03-04 10:18:56 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:56 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:56 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:56 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:56 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:57 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0116_139200.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:57 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:57 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0116_139200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:57 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:57 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:57 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:57 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.15792817038486837, 0.029910419003385869) and rotated -1.03298391693e-05 due to diff to reference Example 2016-03-04 10:18:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03298391693e-05) 2016-03-04 10:18:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03298391693e-05) 2016-03-04 10:18:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03298391693e-05) 2016-03-04 10:18:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03298391693e-05) 2016-03-04 10:18:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03298391693e-05) 2016-03-04 10:18:57 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:57 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:57 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:57 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:57 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:58 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0117_140400.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:58 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:58 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0117_140400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:58 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:58 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:58 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:58 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.053337408612009085, -0.069195571957682958) and rotated 2.55139475845e-05 due to diff to reference Example 2016-03-04 10:18:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.55139475845e-05) 2016-03-04 10:18:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.55139475845e-05) 2016-03-04 10:18:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.55139475845e-05) 2016-03-04 10:18:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.55139475845e-05) 2016-03-04 10:18:58 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.55139475845e-05) 2016-03-04 10:18:59 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:18:59 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:18:59 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:18:59 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:18:59 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:18:59 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0118_141600.0000.tiff with shape (6000, 4800) 2016-03-04 10:18:59 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:18:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:59 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0118_141600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:18:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:18:59 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:18:59 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:18:59 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:18:59 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.013575445936292377, 0.16323499174893641) and rotated -1.45091911744e-05 due to diff to reference Example 2016-03-04 10:18:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.45091911744e-05) 2016-03-04 10:18:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.45091911744e-05) 2016-03-04 10:18:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.45091911744e-05) 2016-03-04 10:18:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.45091911744e-05) 2016-03-04 10:18:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.45091911744e-05) 2016-03-04 10:19:00 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:00 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:00 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:00 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:00 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:00 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0119_142800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:00 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:00 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0119_142800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:00 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:01 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:01 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:01 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.015473601010882021, 0.15324692988493402) and rotated -4.85521410314e-06 due to diff to reference Example 2016-03-04 10:19:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.85521410314e-06) 2016-03-04 10:19:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.85521410314e-06) 2016-03-04 10:19:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.85521410314e-06) 2016-03-04 10:19:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.85521410314e-06) 2016-03-04 10:19:01 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.85521410314e-06) 2016-03-04 10:19:01 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:01 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:01 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:01 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:01 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:01 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0120_144000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:01 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:01 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0120_144000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:01 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:02 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:02 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:02 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0059462528935133223, 0.15336406288694585) and rotated -8.90323895599e-06 due to diff to reference Example 2016-03-04 10:19:02 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.90323895599e-06) 2016-03-04 10:19:02 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.90323895599e-06) 2016-03-04 10:19:02 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.90323895599e-06) 2016-03-04 10:19:02 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.90323895599e-06) 2016-03-04 10:19:02 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.90323895599e-06) 2016-03-04 10:19:02 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:02 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:02 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:02 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:02 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:03 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0121_145200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:03 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:03 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0121_145200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:03 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:03 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:03 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:03 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.029738031269829435, -0.068684470417376062) and rotated 1.11891983006e-05 due to diff to reference Example 2016-03-04 10:19:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.11891983006e-05) 2016-03-04 10:19:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.11891983006e-05) 2016-03-04 10:19:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.11891983006e-05) 2016-03-04 10:19:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.11891983006e-05) 2016-03-04 10:19:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.11891983006e-05) 2016-03-04 10:19:03 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:03 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:03 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:03 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:03 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:04 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0122_146400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:04 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:04 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0122_146400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:04 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:04 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:04 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:04 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.015250261326258396, -0.066326341130282643) and rotated 1.29361429509e-05 due to diff to reference Example 2016-03-04 10:19:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.29361429509e-05) 2016-03-04 10:19:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.29361429509e-05) 2016-03-04 10:19:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.29361429509e-05) 2016-03-04 10:19:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.29361429509e-05) 2016-03-04 10:19:04 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.29361429509e-05) 2016-03-04 10:19:05 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:05 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:05 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:05 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:05 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:05 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0123_147600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:05 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:05 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0123_147600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:05 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:05 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:05 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:05 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.009524023089350445, 0.13306189584723901) and rotated -1.29462040247e-05 due to diff to reference Example 2016-03-04 10:19:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.29462040247e-05) 2016-03-04 10:19:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.29462040247e-05) 2016-03-04 10:19:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.29462040247e-05) 2016-03-04 10:19:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.29462040247e-05) 2016-03-04 10:19:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.29462040247e-05) 2016-03-04 10:19:06 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:06 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:06 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:06 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:06 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:06 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0124_148800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:06 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:06 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0124_148800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:06 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:07 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:07 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:07 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.12877497027058857, -0.037747977314931326) and rotated -5.02898538972e-06 due to diff to reference Example 2016-03-04 10:19:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.02898538972e-06) 2016-03-04 10:19:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.02898538972e-06) 2016-03-04 10:19:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.02898538972e-06) 2016-03-04 10:19:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.02898538972e-06) 2016-03-04 10:19:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.02898538972e-06) 2016-03-04 10:19:07 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:07 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:07 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:07 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:07 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:07 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0125_150000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:07 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:07 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0125_150000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:07 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:08 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:08 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:08 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.041216637392873658, -0.055281140197394052) and rotated 7.86724540941e-06 due to diff to reference Example 2016-03-04 10:19:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.86724540941e-06) 2016-03-04 10:19:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.86724540941e-06) 2016-03-04 10:19:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.86724540941e-06) 2016-03-04 10:19:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.86724540941e-06) 2016-03-04 10:19:08 -- WARNING **Fixture Image** Not supporting rotations yet (got 7.86724540941e-06) 2016-03-04 10:19:08 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:08 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:08 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:08 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:08 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:09 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0126_151200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:09 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:09 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0126_151200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:09 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:09 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:09 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:09 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.030909403925467888, -0.052749222618786007) and rotated 1.14853916739e-05 due to diff to reference Example 2016-03-04 10:19:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14853916739e-05) 2016-03-04 10:19:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14853916739e-05) 2016-03-04 10:19:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14853916739e-05) 2016-03-04 10:19:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14853916739e-05) 2016-03-04 10:19:09 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14853916739e-05) 2016-03-04 10:19:09 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:09 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:09 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:09 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:09 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:10 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0127_152400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:10 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:10 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0127_152400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:10 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:10 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:10 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:10 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0077264430588949535, 0.13780390872803613) and rotated -1.79370852767e-05 due to diff to reference Example 2016-03-04 10:19:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.79370852767e-05) 2016-03-04 10:19:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.79370852767e-05) 2016-03-04 10:19:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.79370852767e-05) 2016-03-04 10:19:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.79370852767e-05) 2016-03-04 10:19:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.79370852767e-05) 2016-03-04 10:19:10 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:10 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:10 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:10 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:10 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:11 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0128_153600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:11 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:11 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0128_153600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:11 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:11 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:11 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:11 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0086902021127457374, 0.14591892181632224) and rotated -2.01274413883e-05 due to diff to reference Example 2016-03-04 10:19:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.01274413883e-05) 2016-03-04 10:19:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.01274413883e-05) 2016-03-04 10:19:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.01274413883e-05) 2016-03-04 10:19:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.01274413883e-05) 2016-03-04 10:19:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.01274413883e-05) 2016-03-04 10:19:12 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:12 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:12 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:12 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:12 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:12 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0129_154800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:12 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:12 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0129_154800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:12 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:13 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:13 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:13 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.043602464579417223, -0.042107178898125618) and rotated 9.44892051686e-06 due to diff to reference Example 2016-03-04 10:19:13 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.44892051686e-06) 2016-03-04 10:19:13 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.44892051686e-06) 2016-03-04 10:19:13 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.44892051686e-06) 2016-03-04 10:19:13 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.44892051686e-06) 2016-03-04 10:19:13 -- WARNING **Fixture Image** Not supporting rotations yet (got 9.44892051686e-06) 2016-03-04 10:19:13 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:13 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:13 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:13 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:13 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:13 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0130_156000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:13 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:13 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0130_156000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:13 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:13 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:14 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:14 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:14 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.053978111851468689, -0.092849266867403912) and rotated 1.5022092939e-05 due to diff to reference Example 2016-03-04 10:19:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5022092939e-05) 2016-03-04 10:19:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5022092939e-05) 2016-03-04 10:19:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5022092939e-05) 2016-03-04 10:19:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5022092939e-05) 2016-03-04 10:19:14 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.5022092939e-05) 2016-03-04 10:19:14 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:14 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:14 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:14 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:14 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:14 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0131_157200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:14 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:15 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0131_157200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:15 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:15 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:15 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:15 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.018731007519259418, 0.13452341919783825) and rotated -2.20424699477e-05 due to diff to reference Example 2016-03-04 10:19:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.20424699477e-05) 2016-03-04 10:19:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.20424699477e-05) 2016-03-04 10:19:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.20424699477e-05) 2016-03-04 10:19:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.20424699477e-05) 2016-03-04 10:19:15 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.20424699477e-05) 2016-03-04 10:19:15 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:15 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:15 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:15 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:15 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:16 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0132_158400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:16 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:16 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0132_158400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:16 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:16 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:16 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:16 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0021633550128209813, 0.15364453537142708) and rotated -1.66153125731e-05 due to diff to reference Example 2016-03-04 10:19:16 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.66153125731e-05) 2016-03-04 10:19:16 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.66153125731e-05) 2016-03-04 10:19:16 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.66153125731e-05) 2016-03-04 10:19:16 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.66153125731e-05) 2016-03-04 10:19:16 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.66153125731e-05) 2016-03-04 10:19:16 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:16 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:16 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:16 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:16 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:17 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0133_159600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:17 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:17 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0133_159600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:17 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:17 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:17 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:17 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033012975708534974, -0.054838942996449681) and rotated -4.43558716122e-06 due to diff to reference Example 2016-03-04 10:19:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.43558716122e-06) 2016-03-04 10:19:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.43558716122e-06) 2016-03-04 10:19:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.43558716122e-06) 2016-03-04 10:19:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.43558716122e-06) 2016-03-04 10:19:17 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.43558716122e-06) 2016-03-04 10:19:18 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:18 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:18 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:18 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:18 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:18 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0134_160800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:18 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:18 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:18 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0134_160800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:18 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:18 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:18 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:18 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:18 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.064243881196025157, -0.073692056332693781) and rotated 1.08613597167e-05 due to diff to reference Example 2016-03-04 10:19:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.08613597167e-05) 2016-03-04 10:19:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.08613597167e-05) 2016-03-04 10:19:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.08613597167e-05) 2016-03-04 10:19:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.08613597167e-05) 2016-03-04 10:19:18 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.08613597167e-05) 2016-03-04 10:19:19 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:19 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:19 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:19 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:19 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:19 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0135_162000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:19 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:19 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0135_162000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:19 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:20 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:20 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:20 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.026276735989133233, -0.037289261849082322) and rotated 8.00698458836e-06 due to diff to reference Example 2016-03-04 10:19:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.00698458836e-06) 2016-03-04 10:19:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.00698458836e-06) 2016-03-04 10:19:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.00698458836e-06) 2016-03-04 10:19:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.00698458836e-06) 2016-03-04 10:19:20 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.00698458836e-06) 2016-03-04 10:19:20 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:20 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:20 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:20 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:20 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:20 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0136_163200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:20 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:20 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0136_163200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:20 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:21 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:21 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:21 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.029216813521353895, 0.13955705812664596) and rotated -1.71816254408e-05 due to diff to reference Example 2016-03-04 10:19:21 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.71816254408e-05) 2016-03-04 10:19:21 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.71816254408e-05) 2016-03-04 10:19:21 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.71816254408e-05) 2016-03-04 10:19:21 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.71816254408e-05) 2016-03-04 10:19:21 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.71816254408e-05) 2016-03-04 10:19:21 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:21 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:21 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:21 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:21 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:22 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0137_164400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:22 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:22 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0137_164400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:22 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:22 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:22 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:22 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0083926412590453001, -0.038366121468925485) and rotated -1.03612773212e-05 due to diff to reference Example 2016-03-04 10:19:22 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03612773212e-05) 2016-03-04 10:19:22 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03612773212e-05) 2016-03-04 10:19:22 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03612773212e-05) 2016-03-04 10:19:22 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03612773212e-05) 2016-03-04 10:19:22 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03612773212e-05) 2016-03-04 10:19:22 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:22 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:22 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:22 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:22 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:23 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0138_165600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:23 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:23 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0138_165600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:23 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:23 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:23 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:23 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.039383594039946956, -0.036202276523226828) and rotated 1.47068515614e-06 due to diff to reference Example 2016-03-04 10:19:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.47068515614e-06) 2016-03-04 10:19:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.47068515614e-06) 2016-03-04 10:19:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.47068515614e-06) 2016-03-04 10:19:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.47068515614e-06) 2016-03-04 10:19:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.47068515614e-06) 2016-03-04 10:19:23 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:23 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:23 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:23 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:23 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:24 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0139_166800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:24 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:24 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0139_166800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:24 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:24 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:24 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:24 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:24 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.043394005561860162, -0.041498848753879734) and rotated 5.40489587455e-06 due to diff to reference Example 2016-03-04 10:19:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.40489587455e-06) 2016-03-04 10:19:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.40489587455e-06) 2016-03-04 10:19:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.40489587455e-06) 2016-03-04 10:19:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.40489587455e-06) 2016-03-04 10:19:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.40489587455e-06) 2016-03-04 10:19:25 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:25 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:25 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:25 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:25 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:25 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0140_168000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:25 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:25 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0140_168000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:25 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:25 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:25 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:25 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.026411020203966018, 0.15531846780587935) and rotated -3.70097280578e-05 due to diff to reference Example 2016-03-04 10:19:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.70097280578e-05) 2016-03-04 10:19:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.70097280578e-05) 2016-03-04 10:19:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.70097280578e-05) 2016-03-04 10:19:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.70097280578e-05) 2016-03-04 10:19:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.70097280578e-05) 2016-03-04 10:19:26 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:26 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:26 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:26 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:26 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:26 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0141_169200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:26 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:26 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0141_169200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:26 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:27 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:27 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:27 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.01361924432456855, -0.028180345216431608) and rotated -2.67971603871e-06 due to diff to reference Example 2016-03-04 10:19:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.67971603871e-06) 2016-03-04 10:19:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.67971603871e-06) 2016-03-04 10:19:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.67971603871e-06) 2016-03-04 10:19:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.67971603871e-06) 2016-03-04 10:19:27 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.67971603871e-06) 2016-03-04 10:19:27 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:27 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:27 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:27 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:27 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:27 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0142_170400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:27 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:27 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0142_170400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:27 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:28 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:28 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:28 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0079358844567044198, -0.014236381446399568) and rotated -9.37983731122e-06 due to diff to reference Example 2016-03-04 10:19:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.37983731122e-06) 2016-03-04 10:19:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.37983731122e-06) 2016-03-04 10:19:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.37983731122e-06) 2016-03-04 10:19:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.37983731122e-06) 2016-03-04 10:19:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.37983731122e-06) 2016-03-04 10:19:28 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:28 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:28 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:28 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:28 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:29 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0143_171600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:29 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:29 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0143_171600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:29 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:29 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:29 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:29 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:29 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.050899786326889775, -0.036064207222125333) and rotated 3.17146892713e-06 due to diff to reference Example 2016-03-04 10:19:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.17146892713e-06) 2016-03-04 10:19:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.17146892713e-06) 2016-03-04 10:19:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.17146892713e-06) 2016-03-04 10:19:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.17146892713e-06) 2016-03-04 10:19:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.17146892713e-06) 2016-03-04 10:19:29 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:29 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:29 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:29 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:29 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:30 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0144_172800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:30 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:30 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0144_172800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:30 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:30 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:30 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:30 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0007175658704928386, 0.13625940088581956) and rotated -2.66734995528e-05 due to diff to reference Example 2016-03-04 10:19:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.66734995528e-05) 2016-03-04 10:19:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.66734995528e-05) 2016-03-04 10:19:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.66734995528e-05) 2016-03-04 10:19:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.66734995528e-05) 2016-03-04 10:19:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.66734995528e-05) 2016-03-04 10:19:31 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:31 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:31 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:31 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:31 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:31 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0145_174000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:31 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:31 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0145_174000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:31 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:31 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:31 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:31 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.02346822903211887, -0.040907875511531223) and rotated 4.49935326351e-06 due to diff to reference Example 2016-03-04 10:19:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.49935326351e-06) 2016-03-04 10:19:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.49935326351e-06) 2016-03-04 10:19:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.49935326351e-06) 2016-03-04 10:19:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.49935326351e-06) 2016-03-04 10:19:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.49935326351e-06) 2016-03-04 10:19:32 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:32 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:32 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:32 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:32 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:32 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0146_175200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:32 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:32 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0146_175200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:32 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:33 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:33 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:33 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.041866395656095769, -0.051700955112986925) and rotated 4.10888812909e-06 due to diff to reference Example 2016-03-04 10:19:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.10888812909e-06) 2016-03-04 10:19:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.10888812909e-06) 2016-03-04 10:19:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.10888812909e-06) 2016-03-04 10:19:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.10888812909e-06) 2016-03-04 10:19:33 -- WARNING **Fixture Image** Not supporting rotations yet (got 4.10888812909e-06) 2016-03-04 10:19:33 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:33 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:33 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:33 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:33 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:34 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0147_176400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:34 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:34 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0147_176400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:34 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:34 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:34 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:34 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:34 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.061882053364172407, -0.031782553659013502) and rotated 8.25969738965e-06 due to diff to reference Example 2016-03-04 10:19:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.25969738965e-06) 2016-03-04 10:19:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.25969738965e-06) 2016-03-04 10:19:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.25969738965e-06) 2016-03-04 10:19:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.25969738965e-06) 2016-03-04 10:19:34 -- WARNING **Fixture Image** Not supporting rotations yet (got 8.25969738965e-06) 2016-03-04 10:19:34 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:34 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:34 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:34 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:34 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:35 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0148_177600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:35 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:35 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0148_177600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:35 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:35 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:35 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:35 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.040537429849678119, -0.046836687193642014) and rotated -8.37006595781e-07 due to diff to reference Example 2016-03-04 10:19:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.37006595781e-07) 2016-03-04 10:19:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.37006595781e-07) 2016-03-04 10:19:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.37006595781e-07) 2016-03-04 10:19:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.37006595781e-07) 2016-03-04 10:19:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.37006595781e-07) 2016-03-04 10:19:36 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:36 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:36 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:36 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:36 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:36 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0149_178800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:36 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:36 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0149_178800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:36 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:36 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:36 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:36 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.011369549513015423, 0.17674806004358365) and rotated -2.63776155709e-05 due to diff to reference Example 2016-03-04 10:19:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.63776155709e-05) 2016-03-04 10:19:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.63776155709e-05) 2016-03-04 10:19:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.63776155709e-05) 2016-03-04 10:19:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.63776155709e-05) 2016-03-04 10:19:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.63776155709e-05) 2016-03-04 10:19:37 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:37 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:37 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:37 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:37 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:37 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0150_180000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:37 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:37 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0150_180000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:37 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:38 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:38 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:38 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.041879123658693139, -0.026772466593646033) and rotated -7.07467655581e-06 due to diff to reference Example 2016-03-04 10:19:38 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.07467655581e-06) 2016-03-04 10:19:38 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.07467655581e-06) 2016-03-04 10:19:38 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.07467655581e-06) 2016-03-04 10:19:38 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.07467655581e-06) 2016-03-04 10:19:38 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.07467655581e-06) 2016-03-04 10:19:38 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:38 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:38 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:38 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:38 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:38 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0151_181200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:38 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:38 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0151_181200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:38 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:39 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:39 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:39 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033339708828520997, -0.01130918999469562) and rotated 2.02979858518e-06 due to diff to reference Example 2016-03-04 10:19:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02979858518e-06) 2016-03-04 10:19:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02979858518e-06) 2016-03-04 10:19:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02979858518e-06) 2016-03-04 10:19:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02979858518e-06) 2016-03-04 10:19:39 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.02979858518e-06) 2016-03-04 10:19:39 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:39 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:39 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:39 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:39 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:39 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0152_182400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:39 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:40 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0152_182400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:40 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:40 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:40 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:40 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.012226774060441889, -0.030501134719486345) and rotated -2.8951709655e-06 due to diff to reference Example 2016-03-04 10:19:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.8951709655e-06) 2016-03-04 10:19:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.8951709655e-06) 2016-03-04 10:19:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.8951709655e-06) 2016-03-04 10:19:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.8951709655e-06) 2016-03-04 10:19:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.8951709655e-06) 2016-03-04 10:19:40 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:40 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:40 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:40 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:40 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:41 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0153_183600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:41 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:41 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:41 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0153_183600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:41 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:41 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:41 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:41 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:41 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0067032186700354641, 0.15824069636573768) and rotated -3.54267175128e-05 due to diff to reference Example 2016-03-04 10:19:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.54267175128e-05) 2016-03-04 10:19:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.54267175128e-05) 2016-03-04 10:19:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.54267175128e-05) 2016-03-04 10:19:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.54267175128e-05) 2016-03-04 10:19:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.54267175128e-05) 2016-03-04 10:19:41 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:41 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:41 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:41 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:41 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:42 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0154_184800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:42 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:42 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0154_184800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:42 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:42 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:42 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:42 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.029336802167061176, -0.020362291464077014) and rotated -1.56753349808e-05 due to diff to reference Example 2016-03-04 10:19:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56753349808e-05) 2016-03-04 10:19:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56753349808e-05) 2016-03-04 10:19:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56753349808e-05) 2016-03-04 10:19:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56753349808e-05) 2016-03-04 10:19:42 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56753349808e-05) 2016-03-04 10:19:43 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:43 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:43 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:43 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:43 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:43 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0155_186000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:43 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:43 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0155_186000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:43 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:44 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:44 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:44 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.030963638156720208, -0.014378614162221007) and rotated 5.97018725484e-07 due to diff to reference Example 2016-03-04 10:19:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.97018725484e-07) 2016-03-04 10:19:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.97018725484e-07) 2016-03-04 10:19:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.97018725484e-07) 2016-03-04 10:19:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.97018725484e-07) 2016-03-04 10:19:44 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.97018725484e-07) 2016-03-04 10:19:44 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:44 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:44 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:44 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:44 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:44 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0156_187200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:44 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:44 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0156_187200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:44 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:44 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:45 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:45 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:45 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.011074978652876174, 0.014644954110622166) and rotated -6.94664969295e-06 due to diff to reference Example 2016-03-04 10:19:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.94664969295e-06) 2016-03-04 10:19:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.94664969295e-06) 2016-03-04 10:19:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.94664969295e-06) 2016-03-04 10:19:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.94664969295e-06) 2016-03-04 10:19:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.94664969295e-06) 2016-03-04 10:19:45 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:45 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:45 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:45 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:45 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:46 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0157_188400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:46 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:46 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0157_188400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:46 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:46 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:46 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:46 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.055571913813234154, 0.22753599038488423) and rotated -4.16964382382e-05 due to diff to reference Example 2016-03-04 10:19:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.16964382382e-05) 2016-03-04 10:19:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.16964382382e-05) 2016-03-04 10:19:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.16964382382e-05) 2016-03-04 10:19:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.16964382382e-05) 2016-03-04 10:19:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.16964382382e-05) 2016-03-04 10:19:46 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:46 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:46 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:46 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:46 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:47 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0158_189600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:47 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:47 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0158_189600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:47 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:47 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:47 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:47 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.020686382048874446, 0.001441549410742482) and rotated -3.62529916857e-06 due to diff to reference Example 2016-03-04 10:19:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.62529916857e-06) 2016-03-04 10:19:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.62529916857e-06) 2016-03-04 10:19:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.62529916857e-06) 2016-03-04 10:19:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.62529916857e-06) 2016-03-04 10:19:47 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.62529916857e-06) 2016-03-04 10:19:48 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:48 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:48 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:48 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:48 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:48 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0159_190800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:48 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:48 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0159_190800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:48 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:48 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:48 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:48 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.013894072379940781, 0.0092076364141083413) and rotated -1.53805130021e-05 due to diff to reference Example 2016-03-04 10:19:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.53805130021e-05) 2016-03-04 10:19:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.53805130021e-05) 2016-03-04 10:19:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.53805130021e-05) 2016-03-04 10:19:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.53805130021e-05) 2016-03-04 10:19:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.53805130021e-05) 2016-03-04 10:19:49 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:49 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:49 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:49 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:49 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:49 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0160_192000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:49 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:49 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0160_192000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:49 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:49 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:50 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:50 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:50 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.011277007465376224, 0.019388310759495653) and rotated -9.70516044781e-06 due to diff to reference Example 2016-03-04 10:19:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.70516044781e-06) 2016-03-04 10:19:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.70516044781e-06) 2016-03-04 10:19:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.70516044781e-06) 2016-03-04 10:19:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.70516044781e-06) 2016-03-04 10:19:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -9.70516044781e-06) 2016-03-04 10:19:50 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:50 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:50 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:50 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:50 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:50 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0161_193200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:50 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:50 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0161_193200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:50 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:51 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:51 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:51 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0091718953354416044, -0.017941631843427785) and rotated 2.97315107506e-06 due to diff to reference Example 2016-03-04 10:19:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.97315107506e-06) 2016-03-04 10:19:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.97315107506e-06) 2016-03-04 10:19:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.97315107506e-06) 2016-03-04 10:19:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.97315107506e-06) 2016-03-04 10:19:51 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.97315107506e-06) 2016-03-04 10:19:51 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:51 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:51 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:51 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:51 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:52 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0162_194400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:52 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:52 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0162_194400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:52 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:52 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:52 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:52 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.015276000139058018, -0.016338386187802218) and rotated -3.72294357749e-06 due to diff to reference Example 2016-03-04 10:19:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.72294357749e-06) 2016-03-04 10:19:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.72294357749e-06) 2016-03-04 10:19:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.72294357749e-06) 2016-03-04 10:19:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.72294357749e-06) 2016-03-04 10:19:52 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.72294357749e-06) 2016-03-04 10:19:52 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:52 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:52 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:52 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:52 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:53 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0163_195600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:53 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:53 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0163_195600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:53 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:53 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:53 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:53 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:53 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0089919987718947905, 0.011017471599150971) and rotated -7.4582898678e-06 due to diff to reference Example 2016-03-04 10:19:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.4582898678e-06) 2016-03-04 10:19:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.4582898678e-06) 2016-03-04 10:19:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.4582898678e-06) 2016-03-04 10:19:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.4582898678e-06) 2016-03-04 10:19:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.4582898678e-06) 2016-03-04 10:19:53 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:53 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:53 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:53 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:53 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:54 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0164_196800.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:54 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:54 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0164_196800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:54 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:54 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:54 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:54 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.01162116856176946, 0.041324694028730846) and rotated -1.64477196167e-05 due to diff to reference Example 2016-03-04 10:19:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.64477196167e-05) 2016-03-04 10:19:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.64477196167e-05) 2016-03-04 10:19:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.64477196167e-05) 2016-03-04 10:19:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.64477196167e-05) 2016-03-04 10:19:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.64477196167e-05) 2016-03-04 10:19:55 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:55 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:55 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:55 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:55 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:55 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0165_198000.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:55 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:55 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0165_198000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:55 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:56 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:56 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:56 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0080964795809753323, 0.25954475202564709) and rotated -4.86729026043e-05 due to diff to reference Example 2016-03-04 10:19:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.86729026043e-05) 2016-03-04 10:19:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.86729026043e-05) 2016-03-04 10:19:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.86729026043e-05) 2016-03-04 10:19:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.86729026043e-05) 2016-03-04 10:19:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.86729026043e-05) 2016-03-04 10:19:56 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:56 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:56 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:56 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:56 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:56 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0166_199200.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:56 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:56 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0166_199200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:56 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:57 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:57 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:57 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.010187302622644742, -0.0146851068548699) and rotated -2.84839149262e-06 due to diff to reference Example 2016-03-04 10:19:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.84839149262e-06) 2016-03-04 10:19:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.84839149262e-06) 2016-03-04 10:19:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.84839149262e-06) 2016-03-04 10:19:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.84839149262e-06) 2016-03-04 10:19:57 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.84839149262e-06) 2016-03-04 10:19:57 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:57 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:57 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:57 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:57 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:58 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0167_200400.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:58 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:58 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0167_200400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:58 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:58 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:58 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:58 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:58 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.028826238357225975, -0.011568885894575942) and rotated -1.0482520536e-06 due to diff to reference Example 2016-03-04 10:19:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0482520536e-06) 2016-03-04 10:19:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0482520536e-06) 2016-03-04 10:19:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0482520536e-06) 2016-03-04 10:19:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0482520536e-06) 2016-03-04 10:19:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.0482520536e-06) 2016-03-04 10:19:58 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:19:58 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:19:58 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:19:58 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:19:58 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:19:59 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0168_201600.0000.tiff with shape (6000, 4800) 2016-03-04 10:19:59 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:19:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:59 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0168_201600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:19:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:19:59 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:19:59 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:19:59 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:19:59 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0011617249919974408, 0.0024933358862047803) and rotated -1.03344450316e-05 due to diff to reference Example 2016-03-04 10:19:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03344450316e-05) 2016-03-04 10:19:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03344450316e-05) 2016-03-04 10:19:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03344450316e-05) 2016-03-04 10:19:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03344450316e-05) 2016-03-04 10:19:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.03344450316e-05) 2016-03-04 10:20:00 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:00 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:00 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:00 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:00 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:00 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0169_202800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:00 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:00 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0169_202800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:00 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:01 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:01 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:01 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0012804666385572243, -0.019166323537812485) and rotated 1.59257697452e-06 due to diff to reference Example 2016-03-04 10:20:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.59257697452e-06) 2016-03-04 10:20:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.59257697452e-06) 2016-03-04 10:20:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.59257697452e-06) 2016-03-04 10:20:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.59257697452e-06) 2016-03-04 10:20:01 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.59257697452e-06) 2016-03-04 10:20:01 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:01 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:01 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:01 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:01 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:01 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0170_204000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:01 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:01 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0170_204000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:01 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:01 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:02 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:02 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:02 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0011935957165102689, -0.015030228441939167) and rotated 1.14031487255e-06 due to diff to reference Example 2016-03-04 10:20:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14031487255e-06) 2016-03-04 10:20:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14031487255e-06) 2016-03-04 10:20:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14031487255e-06) 2016-03-04 10:20:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14031487255e-06) 2016-03-04 10:20:02 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.14031487255e-06) 2016-03-04 10:20:02 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:02 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:02 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:02 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:02 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:03 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0171_205200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:03 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:03 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0171_205200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:03 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:03 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:03 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:03 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:03 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0050072533851543239, -0.0031960270234966024) and rotated 6.86615227184e-07 due to diff to reference Example 2016-03-04 10:20:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.86615227184e-07) 2016-03-04 10:20:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.86615227184e-07) 2016-03-04 10:20:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.86615227184e-07) 2016-03-04 10:20:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.86615227184e-07) 2016-03-04 10:20:03 -- WARNING **Fixture Image** Not supporting rotations yet (got 6.86615227184e-07) 2016-03-04 10:20:03 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:03 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:03 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:03 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:03 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:04 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0172_206400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:04 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:04 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0172_206400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:04 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:04 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:04 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:04 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:04 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033461021252643754, -0.026219729795040319) and rotated -4.75519658339e-06 due to diff to reference Example 2016-03-04 10:20:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.75519658339e-06) 2016-03-04 10:20:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.75519658339e-06) 2016-03-04 10:20:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.75519658339e-06) 2016-03-04 10:20:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.75519658339e-06) 2016-03-04 10:20:04 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.75519658339e-06) 2016-03-04 10:20:04 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:04 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:04 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:04 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:04 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:05 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0173_207600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:05 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:05 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0173_207600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:05 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:05 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:05 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:05 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:05 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.009285690515307957, 0.2408884315417481) and rotated -5.68531431205e-05 due to diff to reference Example 2016-03-04 10:20:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.68531431205e-05) 2016-03-04 10:20:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.68531431205e-05) 2016-03-04 10:20:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.68531431205e-05) 2016-03-04 10:20:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.68531431205e-05) 2016-03-04 10:20:05 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.68531431205e-05) 2016-03-04 10:20:06 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:06 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:06 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:06 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:06 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:06 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0174_208800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:06 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:06 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0174_208800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:06 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:06 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:07 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:07 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:07 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.007744725346043424, -0.025520005245539323) and rotated -3.30932595474e-06 due to diff to reference Example 2016-03-04 10:20:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.30932595474e-06) 2016-03-04 10:20:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.30932595474e-06) 2016-03-04 10:20:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.30932595474e-06) 2016-03-04 10:20:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.30932595474e-06) 2016-03-04 10:20:07 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.30932595474e-06) 2016-03-04 10:20:07 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:07 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:07 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:07 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:07 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:07 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0175_210000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:07 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:07 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0175_210000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:07 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:07 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:08 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:08 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:08 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.017776504311190894, -0.0069400698071149236) and rotated -3.7186086686e-06 due to diff to reference Example 2016-03-04 10:20:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.7186086686e-06) 2016-03-04 10:20:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.7186086686e-06) 2016-03-04 10:20:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.7186086686e-06) 2016-03-04 10:20:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.7186086686e-06) 2016-03-04 10:20:08 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.7186086686e-06) 2016-03-04 10:20:08 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:08 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:08 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:08 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:08 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:09 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0176_211200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:09 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:09 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0176_211200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:09 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:09 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:09 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:09 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:09 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0052817245358861937, -0.046853557039563988) and rotated -8.63229479837e-06 due to diff to reference Example 2016-03-04 10:20:09 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.63229479837e-06) 2016-03-04 10:20:09 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.63229479837e-06) 2016-03-04 10:20:09 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.63229479837e-06) 2016-03-04 10:20:09 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.63229479837e-06) 2016-03-04 10:20:09 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.63229479837e-06) 2016-03-04 10:20:09 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:09 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:09 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:09 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:09 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:10 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0177_212400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:10 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:10 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0177_212400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:10 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:10 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:10 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:10 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:10 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0047094635415116199, -0.034897579052862206) and rotated -7.121628665e-06 due to diff to reference Example 2016-03-04 10:20:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.121628665e-06) 2016-03-04 10:20:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.121628665e-06) 2016-03-04 10:20:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.121628665e-06) 2016-03-04 10:20:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.121628665e-06) 2016-03-04 10:20:10 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.121628665e-06) 2016-03-04 10:20:11 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:11 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:11 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:11 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:11 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:11 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0178_213600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:11 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:11 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0178_213600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:11 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:11 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:11 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:11 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:11 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.008135498721088652, -0.058220027810534702) and rotated -2.35183593179e-06 due to diff to reference Example 2016-03-04 10:20:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.35183593179e-06) 2016-03-04 10:20:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.35183593179e-06) 2016-03-04 10:20:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.35183593179e-06) 2016-03-04 10:20:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.35183593179e-06) 2016-03-04 10:20:11 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.35183593179e-06) 2016-03-04 10:20:12 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:12 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:12 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:12 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:12 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:12 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0179_214800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:12 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:12 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0179_214800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:12 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:12 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:13 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:13 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:13 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.023769929069800355, -0.011877724476884547) and rotated -1.88306035752e-06 due to diff to reference Example 2016-03-04 10:20:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.88306035752e-06) 2016-03-04 10:20:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.88306035752e-06) 2016-03-04 10:20:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.88306035752e-06) 2016-03-04 10:20:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.88306035752e-06) 2016-03-04 10:20:13 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.88306035752e-06) 2016-03-04 10:20:13 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:13 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:13 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:13 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:13 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:13 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0180_216000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:13 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:14 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0180_216000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:14 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:14 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:14 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:14 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:14 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.016857079514390232, -0.063593012727077777) and rotated -1.04723588549e-05 due to diff to reference Example 2016-03-04 10:20:14 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.04723588549e-05) 2016-03-04 10:20:14 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.04723588549e-05) 2016-03-04 10:20:14 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.04723588549e-05) 2016-03-04 10:20:14 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.04723588549e-05) 2016-03-04 10:20:14 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.04723588549e-05) 2016-03-04 10:20:14 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:14 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:14 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:14 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:14 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:15 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0181_217200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:15 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:15 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0181_217200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:15 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:15 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:15 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:15 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:15 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0053275871298505235, -0.04651738887804413) and rotated 3.5784859767e-06 due to diff to reference Example 2016-03-04 10:20:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.5784859767e-06) 2016-03-04 10:20:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.5784859767e-06) 2016-03-04 10:20:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.5784859767e-06) 2016-03-04 10:20:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.5784859767e-06) 2016-03-04 10:20:15 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.5784859767e-06) 2016-03-04 10:20:15 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:15 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:15 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:15 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:15 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:16 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0182_218400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:16 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:16 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0182_218400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:16 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:16 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:16 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:16 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:16 -- INFO **Fixture Image** Positions on current 'Example' will be moved (6.4470764281547119e-05, -0.057415621093033074) and rotated 1.97278657552e-06 due to diff to reference Example 2016-03-04 10:20:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.97278657552e-06) 2016-03-04 10:20:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.97278657552e-06) 2016-03-04 10:20:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.97278657552e-06) 2016-03-04 10:20:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.97278657552e-06) 2016-03-04 10:20:16 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.97278657552e-06) 2016-03-04 10:20:17 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:17 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:17 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:17 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:17 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:17 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0183_219600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:17 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:17 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0183_219600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:17 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:17 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:18 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:18 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:18 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.013169522985994794, -0.0070952666839806016) and rotated -8.96131751458e-07 due to diff to reference Example 2016-03-04 10:20:18 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.96131751458e-07) 2016-03-04 10:20:18 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.96131751458e-07) 2016-03-04 10:20:18 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.96131751458e-07) 2016-03-04 10:20:18 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.96131751458e-07) 2016-03-04 10:20:18 -- WARNING **Fixture Image** Not supporting rotations yet (got -8.96131751458e-07) 2016-03-04 10:20:18 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:18 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:18 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:18 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:18 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:18 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0184_220800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:18 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:19 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0184_220800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:19 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:19 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:19 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:19 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:19 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0050345174419798395, -0.020585587653954462) and rotated -1.12576327246e-05 due to diff to reference Example 2016-03-04 10:20:19 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.12576327246e-05) 2016-03-04 10:20:19 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.12576327246e-05) 2016-03-04 10:20:19 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.12576327246e-05) 2016-03-04 10:20:19 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.12576327246e-05) 2016-03-04 10:20:19 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.12576327246e-05) 2016-03-04 10:20:19 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:19 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:19 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:19 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:19 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:20 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0185_222000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:20 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:20 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0185_222000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:20 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:20 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:20 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:20 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:20 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.029761461564220326, -0.030918773430926194) and rotated -2.823485759e-06 due to diff to reference Example 2016-03-04 10:20:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.823485759e-06) 2016-03-04 10:20:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.823485759e-06) 2016-03-04 10:20:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.823485759e-06) 2016-03-04 10:20:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.823485759e-06) 2016-03-04 10:20:20 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.823485759e-06) 2016-03-04 10:20:20 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:20 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:20 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:20 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:20 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:21 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0186_223200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:21 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:21 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0186_223200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:21 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:21 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:21 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:21 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:21 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0045448362417156813, -0.056930339867562907) and rotated 3.44566842289e-07 due to diff to reference Example 2016-03-04 10:20:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.44566842289e-07) 2016-03-04 10:20:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.44566842289e-07) 2016-03-04 10:20:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.44566842289e-07) 2016-03-04 10:20:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.44566842289e-07) 2016-03-04 10:20:21 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.44566842289e-07) 2016-03-04 10:20:22 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:22 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:22 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:22 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:22 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:22 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0187_224400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:22 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:22 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0187_224400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:22 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:22 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:23 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:23 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:23 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.029159998626899625, -0.0072575301311038247) and rotated 3.75358343566e-06 due to diff to reference Example 2016-03-04 10:20:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.75358343566e-06) 2016-03-04 10:20:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.75358343566e-06) 2016-03-04 10:20:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.75358343566e-06) 2016-03-04 10:20:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.75358343566e-06) 2016-03-04 10:20:23 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.75358343566e-06) 2016-03-04 10:20:23 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:23 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:23 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:23 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:23 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:23 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0188_225600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:23 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:23 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0188_225600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:23 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:23 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:24 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:24 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:24 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.058686872523973456, -0.036433980293926048) and rotated 1.45743709939e-05 due to diff to reference Example 2016-03-04 10:20:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.45743709939e-05) 2016-03-04 10:20:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.45743709939e-05) 2016-03-04 10:20:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.45743709939e-05) 2016-03-04 10:20:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.45743709939e-05) 2016-03-04 10:20:24 -- WARNING **Fixture Image** Not supporting rotations yet (got 1.45743709939e-05) 2016-03-04 10:20:24 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:24 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:24 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:24 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:24 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:25 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0189_226800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:25 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:25 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0189_226800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:25 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:25 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:25 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:25 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:25 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.03166632134143773, 0.16617725180875217) and rotated -3.24345676077e-05 due to diff to reference Example 2016-03-04 10:20:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.24345676077e-05) 2016-03-04 10:20:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.24345676077e-05) 2016-03-04 10:20:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.24345676077e-05) 2016-03-04 10:20:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.24345676077e-05) 2016-03-04 10:20:25 -- WARNING **Fixture Image** Not supporting rotations yet (got -3.24345676077e-05) 2016-03-04 10:20:25 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:25 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:25 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:25 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:25 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:26 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0190_228000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:26 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:26 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0190_228000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:26 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:26 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:26 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:26 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:26 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.01843573725883137, -0.032574289317968429) and rotated -4.69473897449e-06 due to diff to reference Example 2016-03-04 10:20:26 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.69473897449e-06) 2016-03-04 10:20:26 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.69473897449e-06) 2016-03-04 10:20:26 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.69473897449e-06) 2016-03-04 10:20:26 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.69473897449e-06) 2016-03-04 10:20:26 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.69473897449e-06) 2016-03-04 10:20:27 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:27 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:27 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:27 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:27 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:27 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0191_229200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:27 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:27 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0191_229200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:27 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:27 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:28 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:28 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:28 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.044810689377679104, -0.014583802196038201) and rotated -1.60509149175e-06 due to diff to reference Example 2016-03-04 10:20:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.60509149175e-06) 2016-03-04 10:20:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.60509149175e-06) 2016-03-04 10:20:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.60509149175e-06) 2016-03-04 10:20:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.60509149175e-06) 2016-03-04 10:20:28 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.60509149175e-06) 2016-03-04 10:20:28 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:28 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:28 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:28 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:28 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:28 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0192_230400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:28 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:28 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0192_230400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:28 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:28 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:29 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:29 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:29 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.1938224279973042, -0.0051535325609393112) and rotated 3.0025538345e-07 due to diff to reference Example 2016-03-04 10:20:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.0025538345e-07) 2016-03-04 10:20:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.0025538345e-07) 2016-03-04 10:20:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.0025538345e-07) 2016-03-04 10:20:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.0025538345e-07) 2016-03-04 10:20:29 -- WARNING **Fixture Image** Not supporting rotations yet (got 3.0025538345e-07) 2016-03-04 10:20:29 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:29 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:29 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:29 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:29 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:30 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0193_231600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:30 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:30 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0193_231600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:30 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:30 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:30 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:30 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:30 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0065721673423032216, 0.010694397234525846) and rotated -1.08472667891e-05 due to diff to reference Example 2016-03-04 10:20:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.08472667891e-05) 2016-03-04 10:20:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.08472667891e-05) 2016-03-04 10:20:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.08472667891e-05) 2016-03-04 10:20:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.08472667891e-05) 2016-03-04 10:20:30 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.08472667891e-05) 2016-03-04 10:20:30 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:30 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:30 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:30 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:30 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:31 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0194_232800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:31 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:31 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0194_232800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:31 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:31 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:31 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:31 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:31 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.025166946017615526, -0.031756065724342385) and rotated 2.19504044006e-06 due to diff to reference Example 2016-03-04 10:20:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.19504044006e-06) 2016-03-04 10:20:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.19504044006e-06) 2016-03-04 10:20:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.19504044006e-06) 2016-03-04 10:20:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.19504044006e-06) 2016-03-04 10:20:31 -- WARNING **Fixture Image** Not supporting rotations yet (got 2.19504044006e-06) 2016-03-04 10:20:32 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:32 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:32 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:32 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:32 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:32 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0195_234000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:32 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:32 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0195_234000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:32 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:32 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:32 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:32 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:32 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.042121233628023447, -0.01469564343832038) and rotated 5.42749883487e-06 due to diff to reference Example 2016-03-04 10:20:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.42749883487e-06) 2016-03-04 10:20:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.42749883487e-06) 2016-03-04 10:20:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.42749883487e-06) 2016-03-04 10:20:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.42749883487e-06) 2016-03-04 10:20:32 -- WARNING **Fixture Image** Not supporting rotations yet (got 5.42749883487e-06) 2016-03-04 10:20:33 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:33 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:33 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:33 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:33 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:33 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0196_235200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:33 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:33 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:33 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0196_235200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:33 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:33 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:34 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:34 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:34 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.036984684087978316, 0.016028384049529148) and rotated -4.33897185222e-07 due to diff to reference Example 2016-03-04 10:20:34 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.33897185222e-07) 2016-03-04 10:20:34 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.33897185222e-07) 2016-03-04 10:20:34 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.33897185222e-07) 2016-03-04 10:20:34 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.33897185222e-07) 2016-03-04 10:20:34 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.33897185222e-07) 2016-03-04 10:20:34 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:34 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:34 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:34 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:34 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:34 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0197_236400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:34 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:35 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0197_236400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:35 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:35 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:35 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:35 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:35 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.013953947889149276, 0.0088684214279813513) and rotated -6.35430190315e-06 due to diff to reference Example 2016-03-04 10:20:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.35430190315e-06) 2016-03-04 10:20:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.35430190315e-06) 2016-03-04 10:20:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.35430190315e-06) 2016-03-04 10:20:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.35430190315e-06) 2016-03-04 10:20:35 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.35430190315e-06) 2016-03-04 10:20:35 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:35 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:35 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:35 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:35 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:36 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0198_237600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:36 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:36 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0198_237600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:36 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:36 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:36 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:36 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:36 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.010684933676335126, -0.024156423656184717) and rotated -1.34961329232e-05 due to diff to reference Example 2016-03-04 10:20:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.34961329232e-05) 2016-03-04 10:20:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.34961329232e-05) 2016-03-04 10:20:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.34961329232e-05) 2016-03-04 10:20:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.34961329232e-05) 2016-03-04 10:20:36 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.34961329232e-05) 2016-03-04 10:20:36 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:36 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:36 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:36 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:36 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:37 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0199_238800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:37 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:37 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0199_238800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:37 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:37 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:37 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:37 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:37 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.0022795724517929252, 0.006715235118311587) and rotated -1.90242929539e-05 due to diff to reference Example 2016-03-04 10:20:37 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90242929539e-05) 2016-03-04 10:20:37 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90242929539e-05) 2016-03-04 10:20:37 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90242929539e-05) 2016-03-04 10:20:37 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90242929539e-05) 2016-03-04 10:20:37 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90242929539e-05) 2016-03-04 10:20:38 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:38 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:38 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:38 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:38 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:38 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0200_240000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:38 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:38 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0200_240000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:38 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:38 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:39 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:39 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:39 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.0055302994334264595, 0.0061406130123486946) and rotated -5.38776006984e-06 due to diff to reference Example 2016-03-04 10:20:39 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.38776006984e-06) 2016-03-04 10:20:39 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.38776006984e-06) 2016-03-04 10:20:39 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.38776006984e-06) 2016-03-04 10:20:39 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.38776006984e-06) 2016-03-04 10:20:39 -- WARNING **Fixture Image** Not supporting rotations yet (got -5.38776006984e-06) 2016-03-04 10:20:39 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:39 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:39 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:39 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:39 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:40 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0201_241200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:40 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:40 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0201_241200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:40 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:40 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:40 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:40 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:40 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.026460097561274171, 0.01470888710135417) and rotated -2.29466777878e-05 due to diff to reference Example 2016-03-04 10:20:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.29466777878e-05) 2016-03-04 10:20:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.29466777878e-05) 2016-03-04 10:20:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.29466777878e-05) 2016-03-04 10:20:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.29466777878e-05) 2016-03-04 10:20:40 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.29466777878e-05) 2016-03-04 10:20:40 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:40 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:40 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:40 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:40 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:41 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0202_242400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:41 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:41 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:41 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0202_242400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:41 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:41 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:41 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:41 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:41 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.02052214500221794, 0.014896895868484231) and rotated -1.30414089336e-05 due to diff to reference Example 2016-03-04 10:20:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.30414089336e-05) 2016-03-04 10:20:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.30414089336e-05) 2016-03-04 10:20:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.30414089336e-05) 2016-03-04 10:20:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.30414089336e-05) 2016-03-04 10:20:41 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.30414089336e-05) 2016-03-04 10:20:42 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:42 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:42 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:42 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:42 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:42 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0203_243600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:42 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:42 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0203_243600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:42 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:42 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:43 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:43 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:43 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.033477408659517018, 0.0082580478636108037) and rotated -7.02041414815e-06 due to diff to reference Example 2016-03-04 10:20:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.02041414815e-06) 2016-03-04 10:20:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.02041414815e-06) 2016-03-04 10:20:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.02041414815e-06) 2016-03-04 10:20:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.02041414815e-06) 2016-03-04 10:20:43 -- WARNING **Fixture Image** Not supporting rotations yet (got -7.02041414815e-06) 2016-03-04 10:20:43 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:43 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:43 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:43 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:43 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:43 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0204_244800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:43 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:43 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0204_244800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:43 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:43 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:44 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:44 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:44 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.00892796586337378, 0.016575872955362076) and rotated -1.375206349e-05 due to diff to reference Example 2016-03-04 10:20:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.375206349e-05) 2016-03-04 10:20:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.375206349e-05) 2016-03-04 10:20:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.375206349e-05) 2016-03-04 10:20:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.375206349e-05) 2016-03-04 10:20:44 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.375206349e-05) 2016-03-04 10:20:44 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:44 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:44 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:44 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:44 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:45 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0205_246000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:45 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:45 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0205_246000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:45 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:45 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:45 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:45 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:45 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.057141507060881246, 0.037890130121487196) and rotated -1.99797115254e-05 due to diff to reference Example 2016-03-04 10:20:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.99797115254e-05) 2016-03-04 10:20:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.99797115254e-05) 2016-03-04 10:20:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.99797115254e-05) 2016-03-04 10:20:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.99797115254e-05) 2016-03-04 10:20:45 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.99797115254e-05) 2016-03-04 10:20:45 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:45 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:45 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:45 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:45 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:46 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0206_247200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:46 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:46 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0206_247200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:46 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:46 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:46 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:46 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:46 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.063029148860257081, 0.037687135664896232) and rotated -2.87928630306e-05 due to diff to reference Example 2016-03-04 10:20:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.87928630306e-05) 2016-03-04 10:20:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.87928630306e-05) 2016-03-04 10:20:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.87928630306e-05) 2016-03-04 10:20:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.87928630306e-05) 2016-03-04 10:20:46 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.87928630306e-05) 2016-03-04 10:20:47 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:47 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:47 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:47 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:47 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:47 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0207_248400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:47 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:47 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0207_248400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:47 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:47 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:48 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:48 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:48 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.1459465649479815, 0.016365698707526615) and rotated -4.62352817142e-06 due to diff to reference Example 2016-03-04 10:20:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.62352817142e-06) 2016-03-04 10:20:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.62352817142e-06) 2016-03-04 10:20:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.62352817142e-06) 2016-03-04 10:20:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.62352817142e-06) 2016-03-04 10:20:48 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.62352817142e-06) 2016-03-04 10:20:48 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:48 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:48 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:48 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:48 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:48 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0208_249600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:48 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:48 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0208_249600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:48 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:48 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:49 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:49 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:49 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.14060558174012763, 0.025792599164579617) and rotated -1.21069406116e-06 due to diff to reference Example 2016-03-04 10:20:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.21069406116e-06) 2016-03-04 10:20:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.21069406116e-06) 2016-03-04 10:20:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.21069406116e-06) 2016-03-04 10:20:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.21069406116e-06) 2016-03-04 10:20:49 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.21069406116e-06) 2016-03-04 10:20:49 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:49 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:49 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:49 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:49 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:50 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0209_250800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:50 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:50 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0209_250800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:50 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:50 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:50 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:50 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:50 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.071028747346199836, 0.05588400561475737) and rotated -2.88603784021e-05 due to diff to reference Example 2016-03-04 10:20:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.88603784021e-05) 2016-03-04 10:20:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.88603784021e-05) 2016-03-04 10:20:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.88603784021e-05) 2016-03-04 10:20:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.88603784021e-05) 2016-03-04 10:20:50 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.88603784021e-05) 2016-03-04 10:20:50 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:50 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:50 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:50 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:50 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:51 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0210_252000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:51 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:51 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0210_252000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:51 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:51 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:51 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:51 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:51 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.066999435302771346, 0.032113806027875093) and rotated -2.59260532432e-05 due to diff to reference Example 2016-03-04 10:20:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.59260532432e-05) 2016-03-04 10:20:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.59260532432e-05) 2016-03-04 10:20:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.59260532432e-05) 2016-03-04 10:20:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.59260532432e-05) 2016-03-04 10:20:51 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.59260532432e-05) 2016-03-04 10:20:52 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:52 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:52 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:52 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:52 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:52 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0211_253200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:52 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:52 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0211_253200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:52 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:52 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:53 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:53 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:53 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.016034447504874077, 0.031199331728278896) and rotated -1.57825783178e-05 due to diff to reference Example 2016-03-04 10:20:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.57825783178e-05) 2016-03-04 10:20:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.57825783178e-05) 2016-03-04 10:20:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.57825783178e-05) 2016-03-04 10:20:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.57825783178e-05) 2016-03-04 10:20:53 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.57825783178e-05) 2016-03-04 10:20:53 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:53 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:53 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:53 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:53 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:54 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0212_254400.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:54 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:54 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0212_254400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:54 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:54 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:54 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:54 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:54 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.017602907778609733, 0.025580258987398945) and rotated -1.56326600036e-05 due to diff to reference Example 2016-03-04 10:20:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56326600036e-05) 2016-03-04 10:20:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56326600036e-05) 2016-03-04 10:20:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56326600036e-05) 2016-03-04 10:20:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56326600036e-05) 2016-03-04 10:20:54 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.56326600036e-05) 2016-03-04 10:20:54 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:54 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:54 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:54 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:54 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:55 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0213_255600.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:55 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:55 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0213_255600.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:55 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:55 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:55 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:55 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:55 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.006436771856688968, 0.01259814286894804) and rotated -1.9132144e-05 due to diff to reference Example 2016-03-04 10:20:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.9132144e-05) 2016-03-04 10:20:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.9132144e-05) 2016-03-04 10:20:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.9132144e-05) 2016-03-04 10:20:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.9132144e-05) 2016-03-04 10:20:55 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.9132144e-05) 2016-03-04 10:20:56 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:56 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:56 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:56 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:56 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:56 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0214_256800.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:56 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:56 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0214_256800.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:56 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:56 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:56 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:56 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:56 -- INFO **Fixture Image** Positions on current 'Example' will be moved (-0.014579297870758031, 0.0037294511268631445) and rotated -6.45993923895e-06 due to diff to reference Example 2016-03-04 10:20:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.45993923895e-06) 2016-03-04 10:20:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.45993923895e-06) 2016-03-04 10:20:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.45993923895e-06) 2016-03-04 10:20:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.45993923895e-06) 2016-03-04 10:20:56 -- WARNING **Fixture Image** Not supporting rotations yet (got -6.45993923895e-06) 2016-03-04 10:20:57 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:57 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:57 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:57 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:57 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:57 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0215_258000.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:57 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:57 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0215_258000.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:57 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:57 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:58 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:58 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:58 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.030690788988655033, 0.0092264436183882026) and rotated -4.38897788975e-06 due to diff to reference Example 2016-03-04 10:20:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.38897788975e-06) 2016-03-04 10:20:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.38897788975e-06) 2016-03-04 10:20:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.38897788975e-06) 2016-03-04 10:20:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.38897788975e-06) 2016-03-04 10:20:58 -- WARNING **Fixture Image** Not supporting rotations yet (got -4.38897788975e-06) 2016-03-04 10:20:58 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:58 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:58 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:58 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:58 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:20:59 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0216_259200.0000.tiff with shape (6000, 4800) 2016-03-04 10:20:59 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:20:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:59 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0216_259200.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:20:59 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:20:59 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:20:59 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:20:59 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:20:59 -- INFO **Fixture Image** Positions on current 'Example' will be moved (0.020108782969051237, -0.00034273134855311582) and rotated -2.41336173487e-06 due to diff to reference Example 2016-03-04 10:20:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.41336173487e-06) 2016-03-04 10:20:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.41336173487e-06) 2016-03-04 10:20:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.41336173487e-06) 2016-03-04 10:20:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.41336173487e-06) 2016-03-04 10:20:59 -- WARNING **Fixture Image** Not supporting rotations yet (got -2.41336173487e-06) 2016-03-04 10:20:59 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:20:59 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:20:59 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:20:59 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:20:59 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:21:00 -- INFO **Fixture Image** Loaded image /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0217_260400.0000.tiff with shape (6000, 4800) 2016-03-04 10:21:00 -- INFO **1st Pass Analysis** Running marker analysis on > 2016-03-04 10:21:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:21:00 -- INFO **Fixture Image** Running marker detection (3 markers on /home/martin/Data/scan-o-matic_data/SoMSuppData/SoMSuppData_0217_260400.0000.tiff ((1500, 1200)) using /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png, scale 0.25) 2016-03-04 10:21:00 -- INFO **Fixture example** Using marker at '/home/martin/.scan-o-matic/images/orientation_marker_150dpi.png' 2016-03-04 10:21:00 -- INFO **Resource Image Analysis** Analysing image (1500, 1200) using pattern file /home/martin/.scan-o-matic/images/orientation_marker_150dpi.png and scale 0.25 2016-03-04 10:21:00 -- INFO **1st Pass Analysis** Marker analysis run 2016-03-04 10:21:00 -- INFO **1st Pass Analysis** Setting current fixture_image areas for 2016-03-04 10:21:00 -- INFO **Fixture Image** Positions on current 'Example' will be moved (6.284039955062326e-10, -9.5762212974174576e-10) and rotated -1.90347159331e-13 due to diff to reference Example 2016-03-04 10:21:00 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90347159331e-13) 2016-03-04 10:21:00 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90347159331e-13) 2016-03-04 10:21:00 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90347159331e-13) 2016-03-04 10:21:00 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90347159331e-13) 2016-03-04 10:21:00 -- WARNING **Fixture Image** Not supporting rotations yet (got -1.90347159331e-13) 2016-03-04 10:21:00 -- INFO **Analyze Grayscale** Loaded pre-trimmed image slice 2016-03-04 10:21:00 -- INFO **Analyze Grayscale** GRAYSCALE: Got signal with new method 2016-03-04 10:21:00 -- INFO **Analyze Grayscale** Offsetting centers with 0 2016-03-04 10:21:00 -- INFO **1st Pass Analysis** Grayscale analysed for > 2016-03-04 10:21:00 -- INFO **1st Pass Analysis** First pass analysis done for > 2016-03-04 10:21:01 -- INFO **Client Proxy** No client active 2016-03-04 10:21:01 -- INFO **Client Proxy** Communicates with 'http://127.0.0.1:12451/' 2016-03-04 10:21:01 -- INFO **RPC Job c512286c9f0691dc44bd6ae140f1f3e9 (proc-side)** Next returned stop iteration, job is done. 2016-03-04 10:21:01 -- INFO **RPC Job c512286c9f0691dc44bd6ae140f1f3e9 (proc-side)** Will not recieve any more communications 2016-03-04 10:21:01 -- INFO **RPC Job c512286c9f0691dc44bd6ae140f1f3e9 (proc-side)** Job completed